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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA:7.5 nTPM
GTEx:8.7 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:11.9 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
1870 Female, age 42, unknown 8.4
2411 Female, age 72, unknown 8.0
1833 Male, age 53, unknown 7.1
1827 Male, age 72, unknown 6.9
1830 Male, age 51, unknown 6.7
2828 Female, age 72, unknown 6.7
2219 Male, age 76, both hemispheres 6.5
2019 Male, age 18, unknown 6.4
2666 Male, age 74, left hemisphere 6.3
2586 Male, age 75, left hemisphere 6.1
Dorsal raphe nucleus
nTPM: 7.2
2016 Female, age 72, unknown 7.4
2750 Male, age 76, both hemispheres 7.3
2298 Female, age 72, unknown 7.2
2047 Male, age 72, unknown 7.1
1828 Male, age 53, unknown 7.0
Inferior colliculus
nTPM: 7.1
2097 Female, age 72, unknown 7.7
1848 Female, age 42, unknown 7.0
1890 Male, age 53, unknown 7.0
2849 Male, age 72, unknown 6.9
Median raphe nucleus
nTPM: 7.4
2220 Male, age 76, midline 7.4
Pedunculopontine tegmental nucleus
nTPM: 7.1
1921 Female, age 85, both hemispheres 7.6
2334 Male, age 80, both hemispheres 7.3
2338 Male, age 61, both hemispheres 6.2
Periaquaductal grey, anterior
nTPM: 6.6
2502 Female, age 75, unknown 7.1
1947 Male, age 18, unknown 6.5
1795 Male, age 51, unknown 6.1
Periaquaductal grey, dorsal
nTPM: 7.5
1840 Male, age 53, unknown 7.8
2850 Male, age 76, both hemispheres 7.7
2464 Female, age 72, unknown 7.4
1831 Male, age 72, unknown 6.9
Periaquaductal grey, lateral
nTPM: 6.7
2053 Male, age 18, unknown 7.1
2140 Male, age 76, both hemispheres 7.1
2272 Male, age 74, both hemispheres 6.0
Pretectal area
nTPM: 6.5
2224 Female, age 72, unknown 7.3
2825 Male, age 18, unknown 7.3
2316 Male, age 76, right hemisphere 6.8
1817 Female, age 42, unknown 6.6
1944 Female, age 72, unknown 6.5
1815 Male, age 53, unknown 6.4
1816 Male, age 51, unknown 6.4
2667 Female, age 75, unknown 6.4
2273 Male, age 74, both hemispheres 6.2
2007 Male, age 72, unknown 6.1
2407 Male, age 75, both hemispheres 5.8
Red nucleus
nTPM: 7.1
1954 Female, age 42, unknown 8.0
1821 Female, age 72, unknown 7.8
2503 Female, age 72, unknown 7.5
2725 Female, age 75, unknown 7.4
1904 Male, age 53, unknown 7.3
2227 Male, age 72, unknown 7.2
2769 Male, age 72, unknown 7.2
1865 Male, age 51, unknown 7.1
2823 Male, age 76, right hemisphere 7.0
2588 Male, age 74, left hemisphere 6.9
2785 Male, age 18, unknown 6.2
2584 Male, age 75, left hemisphere 6.0
Substantia nigra
nTPM: 6.9
2241 Male, age 72, unknown 8.1
2409 Female, age 72, unknown 7.4
2699 Male, age 18, unknown 7.2
1851 Male, age 51, unknown 7.1
1889 Female, age 72, unknown 7.0
2583 Male, age 75, right hemisphere 6.8
2590 Female, age 75, unknown 6.8
1916 Female, age 42, unknown 6.6
1941 Male, age 53, unknown 6.4
2665 Male, age 74, both hemispheres 6.1
Superior colliculus
nTPM: 6.5
1839 Male, age 51, unknown 7.1
1913 Female, age 42, unknown 7.0
2587 Male, age 74, left hemisphere 7.0
1895 Male, age 76, right hemisphere 6.9
2261 Male, age 18, unknown 6.6
1796 Male, age 53, unknown 6.5
1995 Male, age 72, unknown 6.5
2087 Female, age 72, unknown 6.5
2668 Female, age 75, unknown 6.0
2664 Male, age 75, both hemispheres 5.2
Ventral tegmental area
nTPM: 7.1
2021 Male, age 53, unknown 7.4
2410 Female, age 72, unknown 7.2
1942 Male, age 51, unknown 7.1
2218 Male, age 76, both hemispheres 7.1
1915 Female, age 42, unknown 7.0
2223 Female, age 72, unknown 6.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.7
Samples: 139

Max nTPM: 15.1
Min nTPM: 5.2
Std nTPM: 1.8
Median nTPM: 8.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 13.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 13.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 13.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 12.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 12.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 12.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.7
Pig sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 31.1
Min nTPM: 23.6
Sample A Female 30.9
Sample B Female 31.1
Sample C Male 25.3
Sample D Male 23.6
Periaqueductal gray
nTPM: 23.3
Samples: 3

Max nTPM: 23.8
Min nTPM: 22.8
Sample B Female 23.4
Sample C Male 23.8
Sample D Male 22.8
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.2
Sample A Female 28.8
Sample B Female 22.2
Sample C Male 25.0
Sample D Male 22.4
Superior colliculi
nTPM: 22.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 18.3
Sample A Female 24.2
Sample B Female 18.3
Sample C Male 23.8
Sample D Male 22.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 11.1
Sample A Male 12.5
Sample B Male 11.1
Sample C Female 12.8
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
76098381 Antisense, RP_060626_01_F06, Mouse strain C57BL/6J (56 days, male) 4.2
1685 Antisense, RP_040526_01_H04, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.