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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA:28.5 nTPM
GTEx:12.4 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Pig:5.5 nTPM
Mouse:51.9 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.5
Sample id Sample description nTPM
Hippocampus
nTPM: 28.0
2529 Female, age 94, left hemisphere 30.8
1911 Female, age 85, right hemisphere 29.6
2148 Female, age 91, left hemisphere 28.2
1855 Male, age 76, left hemisphere 27.8
2621 Female, age 67, right hemisphere 26.4
1898 Male, age 80, left hemisphere 25.1
Dentate gyrus
nTPM: 28.1
2528 Male, age 74, both hemispheres 31.1
2246 Female, age 85, both hemispheres 30.4
2530 Female, age 94, left hemisphere 28.5
1927 Female, age 91, both hemispheres 26.8
2531 Female, age 67, both hemispheres 26.7
2010 Male, age 76, both hemispheres 25.0
Entorhinal gyrus
nTPM: 27.4
2686 Male, age 75, right hemisphere 29.3
2117 Female, age 91, right hemisphere 28.2
2764 Male, age 80, right hemisphere 28.1
2613 Female, age 94, left hemisphere 27.7
1787 Male, age 76, left hemisphere 26.2
1938 Female, age 85, left hemisphere 24.8
Hippocampus, CA1
nTPM: 27.2
1873 Female, age 85, both hemispheres 29.8
2527 Male, age 74, both hemispheres 29.6
2082 Female, age 91, right hemisphere 28.0
2045 Male, age 76, both hemispheres 25.9
2749 Male, age 80, left hemisphere 22.9
Hippocampus, CA2
nTPM: 27.5
2113 Female, age 91, right hemisphere 30.0
1940 Female, age 85, left hemisphere 29.0
2437 Female, age 94, left hemisphere 28.3
2249 Male, age 74, both hemispheres 27.2
1892 Male, age 76, both hemispheres 25.4
1963 Male, age 80, left hemisphere 25.3
Hippocampus, CA3
nTPM: 28.5
2436 Male, age 74, both hemispheres 31.4
2620 Female, age 94, left hemisphere 30.8
1891 Female, age 85, both hemispheres 30.6
2861 Female, age 67, both hemispheres 30.5
1867 Male, age 76, both hemispheres 23.8
2137 Male, age 80, left hemisphere 23.6
Parahippocampal cortex
nTPM: 26.9
2692 Male, age 74, both hemispheres 31.2
2622 Female, age 67, right hemisphere 29.5
2693 Female, age 94, both hemispheres 28.0
1990 Female, age 91, right hemisphere 27.4
1933 Female, age 85, both hemispheres 26.4
2018 Male, age 76, both hemispheres 26.3
1850 Male, age 80, both hemispheres 25.5
2250 Female, age 67, right hemisphere 25.5
2245 Female, age 91, both hemispheres 25.2
2532 Female, age 72, left hemisphere 24.2
Perirhinal gyrus
nTPM: 25.0
2521 Female, age 94, right hemisphere 26.1
2848 Male, age 76, right hemisphere 25.9
1794 Male, age 80, right hemisphere 24.8
1841 Female, age 85, right hemisphere 24.3
1847 Female, age 91, left hemisphere 23.6
Subiculum
nTPM: 28.5
2042 Male, age 76, both hemispheres 31.1
2619 Male, age 74, both hemispheres 30.8
1901 Male, age 80, both hemispheres 28.8
2729 Female, age 91, right hemisphere 28.0
2438 Female, age 94, left hemisphere 26.4
1977 Female, age 85, both hemispheres 25.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.4
Samples: 197

Max nTPM: 29.3
Min nTPM: 3.9
Std nTPM: 4.9
Median nTPM: 11.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 29.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 27.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 24.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 22.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 22.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 22.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 22.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 22.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 21.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 21.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 21.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 8.3
FF:10153-102I9 76 years, female 12.4
FF:10169-103B7 60 years, female 4.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2.6
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.2
Sample A Female 3.8
Sample B Female 2.6
Sample C Male 2.8
Sample D Male 1.2
Entorhinal cortex
nTPM: 2.8
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 4.1
Sample C Male 2.8
Sample D Male 2.2
Subiculum
nTPM: 4.5
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.2
Sample A Female 5.5
Sample B Female 5.1
Sample C Male 3.2
Sample D Male 4.3
Ventral hippocampus
nTPM: 5.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 2.0
Sample A Female 9.4
Sample B Female 3.9
Sample C Male 6.7
Sample D Male 2.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 51.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.1
Samples: 4

Max nTPM: 46.3
Min nTPM: 31.8
Sample A Male 39.3
Sample B Male 31.8
Sample C Female 46.3
Sample D Female 43.0
Hippocampal formation
nTPM: 51.9
Samples: 4

Max nTPM: 57.0
Min nTPM: 47.3
Sample A Male 52.8
Sample B Male 47.3
Sample C Female 50.6
Sample D Female 57.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
69549298 Antisense, RP_050126_02_H12, Mouse strain C57BL/6J (56 days, male) 1.8
75042269 Antisense, RP_060412_02_D11, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

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