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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA:26.6 nTPM
GTEx:19.7 nTPM
FANTOM5:40.3 Scaled Tags Per Million
Pig:14.0 nTPM
Mouse:42.7 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.6
2481 Female, age 94, left hemisphere 29.9
1857 Female, age 85, left hemisphere 23.6
2290 Female, age 72, unknown 23.2
1854 Male, age 80, left hemisphere 23.0
2288 Male, age 75, left hemisphere 22.5
2289 Male, age 61, right hemisphere 21.1
2846 Female, age 79, unknown 19.5
1781 Male, age 74, unknown 17.7
Claustrum
nTPM: 16.0
2292 Female, age 85, both hemispheres 17.7
2198 Male, age 80, both hemispheres 17.3
2196 Female, age 79, unknown 16.9
2392 Female, age 94, both hemispheres 16.9
1956 Male, age 74, unknown 16.4
2645 Female, age 72, unknown 15.1
2284 Female, age 91, both hemispheres 14.9
2491 Male, age 75, both hemispheres 14.9
2568 Male, age 61, both hemispheres 13.6
Globus pallidus, externus
nTPM: 23.8
1996 Male, age 80, right hemisphere 26.5
2646 Male, age 61, right hemisphere 26.2
2772 Female, age 79, unknown 24.1
2395 Male, age 75, both hemispheres 22.7
2567 Female, age 72, unknown 19.5
Globus pallidus, internus
nTPM: 26.6
2483 Female, age 94, right hemisphere 36.3
2037 Male, age 80, right hemisphere 28.5
1818 Male, age 74, unknown 27.6
2778 Female, age 91, both hemispheres 27.3
2111 Female, age 85, right hemisphere 24.2
2287 Male, age 75, right hemisphere 22.7
2566 Female, age 72, unknown 19.4
Nucleus accumbens
nTPM: 21.8
2286 Male, age 75, left hemisphere 25.1
2824 Male, age 61, right hemisphere 24.2
1806 Female, age 85, left hemisphere 23.9
2732 Male, age 80, right hemisphere 21.4
2391 Female, age 94, left hemisphere 21.2
2698 Female, age 72, unknown 21.2
1856 Female, age 91, right hemisphere 19.3
1783 Male, age 74, unknown 18.0
Nucleus basalis of Meynert
nTPM: 22.3
2569 Male, age 61, both hemispheres 28.5
2393 Male, age 80, right hemisphere 22.9
2821 Male, age 75, both hemispheres 19.4
2484 Female, age 94, left hemisphere 18.3
Nucleus of the diagonal band
nTPM: 17.4
1979 Male, age 74, unknown 18.0
2029 Male, age 61, right hemisphere 17.8
1812 Female, age 91, both hemispheres 17.6
2775 Male, age 80, right hemisphere 17.5
2195 Female, age 85, both hemispheres 16.3
Olfactory tubercle
nTPM: 18.0
1846 Male, age 80, right hemisphere 20.7
2856 Male, age 75, right hemisphere 18.8
2487 Female, age 94, left hemisphere 16.6
1998 Female, age 91, both hemispheres 15.8
Putamen
nTPM: 19.9
2482 Female, age 94, left hemisphere 23.1
1838 Male, age 80, right hemisphere 20.9
1937 Female, age 91, right hemisphere 19.9
1829 Male, age 74, unknown 19.6
2489 Female, age 72, unknown 19.1
2466 Female, age 79, unknown 18.2
2647 Male, age 75, left hemisphere 18.2
Septal nuclei
nTPM: 18.2
2199 Male, age 80, right hemisphere 23.3
2394 Male, age 61, left hemisphere 20.4
2059 Female, age 85, both hemispheres 18.0
2031 Female, age 72, unknown 17.1
2009 Female, age 91, both hemispheres 16.9
1960 Male, age 74, unknown 16.2
2629 Female, age 94, right hemisphere 15.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.6
Samples: 246

Max nTPM: 40.3
Min nTPM: 7.4
Std nTPM: 6.4
Median nTPM: 18.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 40.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 38.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 38.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 38.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 37.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 35.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 34.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 34.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 34.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 34.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 33.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.1
Samples: 246

Max nTPM: 34.8
Min nTPM: 7.1
Std nTPM: 5.5
Median nTPM: 16.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 34.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 34.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 33.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 33.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 32.8
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 32.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 31.6
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 30.9
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 30.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 29.9
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 29.5
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Brain - Putamen (basal ganglia)
Average nTPM: 19.7
Samples: 205

Max nTPM: 40.8
Min nTPM: 7.9
Std nTPM: 6.4
Median nTPM: 19.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 40.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 37.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 37.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 35.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 35.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 32.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 32.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 32.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 31.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 31.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 31.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.5
FF:10164-103B2 76 years, female 29.5
Globus pallidus
Scaled Tags Per Million: 40.3
FF:10175-103C4 60 years, female 49.7
FF:10161-103A8 76 years, female 30.8
Nucleus accumbens
Scaled Tags Per Million: 29.3
FF:10037-101F1 23-56 years, mixed 29.3
Putamen
Scaled Tags Per Million: 28.6
FF:10176-103C5 60 years, female 28.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.0
Pig sample Sample description nTPM
Caudate
nTPM: 10.3
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.0
Sample A Female 9.9
Sample B Female 11.2
Sample C Male 11.1
Sample D Male 9.0
Putamen
nTPM: 14.0
Samples: 4

Max nTPM: 17.7
Min nTPM: 10.6
Sample A Female 17.7
Sample B Female 10.6
Sample C Male 13.6
Sample D Male 14.2
Septum
nTPM: 13.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 11.9
Sample A Female 13.2
Sample B Female 11.9
Sample C Male 16.4
Sample D Male 13.5
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 15.4
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 13.4
Sample C Male 13.3
Sample D Male 15.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.7
Samples: 4

Max nTPM: 46.2
Min nTPM: 39.6
Sample A Male 43.0
Sample B Male 39.6
Sample C Female 46.2
Sample D Female 42.0
Septum
nTPM: 38.4
Samples: 4

Max nTPM: 41.1
Min nTPM: 32.7
Sample A Male 32.7
Sample B Male 39.8
Sample C Female 39.9
Sample D Female 41.1
Ventral forebrain
nTPM: 37.8
Samples: 4

Max nTPM: 43.9
Min nTPM: 34.3
Sample A Male 34.3
Sample B Male 36.0
Sample C Female 43.9
Sample D Female 37.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
75774627 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.8
75773649 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.7
75774627 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.7
75773649 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.