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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA:26.3 nTPM
GTEx:25.0 nTPM
FANTOM5:49.3 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:40.3 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Hippocampus
nTPM: 17.8
2621 Female, age 67, right hemisphere 23.1
1898 Male, age 80, left hemisphere 21.6
2148 Female, age 91, left hemisphere 16.3
1855 Male, age 76, left hemisphere 16.1
2529 Female, age 94, left hemisphere 15.9
1911 Female, age 85, right hemisphere 13.7
Dentate gyrus
nTPM: 19.7
2531 Female, age 67, both hemispheres 26.0
2530 Female, age 94, left hemisphere 20.0
1927 Female, age 91, both hemispheres 19.9
2010 Male, age 76, both hemispheres 17.8
2528 Male, age 74, both hemispheres 17.4
2246 Female, age 85, both hemispheres 17.0
Entorhinal gyrus
nTPM: 26.1
2613 Female, age 94, left hemisphere 34.4
2764 Male, age 80, right hemisphere 31.3
2686 Male, age 75, right hemisphere 26.7
1938 Female, age 85, left hemisphere 25.5
1787 Male, age 76, left hemisphere 23.3
2117 Female, age 91, right hemisphere 15.4
Hippocampus, CA1
nTPM: 18.9
2749 Male, age 80, left hemisphere 24.7
2082 Female, age 91, right hemisphere 19.1
2045 Male, age 76, both hemispheres 17.5
1873 Female, age 85, both hemispheres 16.7
2527 Male, age 74, both hemispheres 16.5
Hippocampus, CA2
nTPM: 18.3
2437 Female, age 94, left hemisphere 24.4
1892 Male, age 76, both hemispheres 19.3
2113 Female, age 91, right hemisphere 18.2
1940 Female, age 85, left hemisphere 16.3
1963 Male, age 80, left hemisphere 16.1
2249 Male, age 74, both hemispheres 15.3
Hippocampus, CA3
nTPM: 22.1
2620 Female, age 94, left hemisphere 34.2
2861 Female, age 67, both hemispheres 26.3
2137 Male, age 80, left hemisphere 24.2
1867 Male, age 76, both hemispheres 17.6
1891 Female, age 85, both hemispheres 16.6
2436 Male, age 74, both hemispheres 13.6
Parahippocampal cortex
nTPM: 24.2
2693 Female, age 94, both hemispheres 33.0
2622 Female, age 67, right hemisphere 27.0
1850 Male, age 80, both hemispheres 26.7
2692 Male, age 74, both hemispheres 23.5
1990 Female, age 91, right hemisphere 23.3
2245 Female, age 91, both hemispheres 23.3
2532 Female, age 72, left hemisphere 22.9
2018 Male, age 76, both hemispheres 21.4
1933 Female, age 85, both hemispheres 21.1
2250 Female, age 67, right hemisphere 19.4
Perirhinal gyrus
nTPM: 26.3
1794 Male, age 80, right hemisphere 32.1
1847 Female, age 91, left hemisphere 27.1
1841 Female, age 85, right hemisphere 26.0
2848 Male, age 76, right hemisphere 25.0
2521 Female, age 94, right hemisphere 21.6
Subiculum
nTPM: 20.4
2438 Female, age 94, left hemisphere 28.6
2619 Male, age 74, both hemispheres 20.7
1901 Male, age 80, both hemispheres 20.4
1977 Female, age 85, both hemispheres 20.2
2729 Female, age 91, right hemisphere 17.6
2042 Male, age 76, both hemispheres 15.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.0
Samples: 197

Max nTPM: 52.7
Min nTPM: 11.5
Std nTPM: 8.2
Median nTPM: 22.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 52.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 46.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 46.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 45.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 45.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 44.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 43.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 43.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 42.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 42.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 41.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.3
FF:10169-103B7 60 years, female 54.4
FF:10153-102I9 76 years, female 44.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 25.1
Min nTPM: 16.2
Sample A Female 25.1
Sample B Female 20.3
Sample C Male 16.2
Sample D Male 17.6
Entorhinal cortex
nTPM: 15.3
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.9
Sample A Female 17.7
Sample B Female 15.1
Sample C Male 14.5
Sample D Male 13.9
Subiculum
nTPM: 13.8
Samples: 4

Max nTPM: 18.0
Min nTPM: 10.9
Sample A Female 18.0
Sample B Female 11.6
Sample C Male 14.6
Sample D Male 10.9
Ventral hippocampus
nTPM: 17.6
Samples: 4

Max nTPM: 22.1
Min nTPM: 11.3
Sample A Female 17.3
Sample B Female 11.3
Sample C Male 19.7
Sample D Male 22.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 38.8
Min nTPM: 33.4
Sample A Male 35.0
Sample B Male 33.4
Sample C Female 36.1
Sample D Female 38.8
Hippocampal formation
nTPM: 40.4
Samples: 4

Max nTPM: 43.2
Min nTPM: 36.1
Sample A Male 36.1
Sample B Male 43.2
Sample C Female 41.6
Sample D Female 40.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69782079 Antisense, RP_050505_02_C07, Mouse strain C57BL/6J (56 days, male) 3.0

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