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ATF6B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA:7.7 nTPM
GTEx:28.3 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:15.9 nTPM
Allen mouse:5.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.7
2219 Male, age 76, both hemispheres 13.5
2411 Female, age 72, unknown 8.7
2019 Male, age 18, unknown 8.2
2666 Male, age 74, left hemisphere 7.9
1833 Male, age 53, unknown 7.7
1830 Male, age 51, unknown 6.5
1870 Female, age 42, unknown 6.5
1827 Male, age 72, unknown 6.4
2586 Male, age 75, left hemisphere 6.2
2828 Female, age 72, unknown 5.6
Dorsal raphe nucleus
nTPM: 5.4
2298 Female, age 72, unknown 6.5
2016 Female, age 72, unknown 5.9
1828 Male, age 53, unknown 5.6
2750 Male, age 76, both hemispheres 4.7
2047 Male, age 72, unknown 4.4
Inferior colliculus
nTPM: 5.7
2849 Male, age 72, unknown 7.9
1848 Female, age 42, unknown 6.7
1890 Male, age 53, unknown 4.3
2097 Female, age 72, unknown 3.7
Median raphe nucleus
nTPM: 6.9
2220 Male, age 76, midline 6.9
Pedunculopontine tegmental nucleus
nTPM: 6.5
2338 Male, age 61, both hemispheres 8.7
1921 Female, age 85, both hemispheres 5.5
2334 Male, age 80, both hemispheres 5.2
Periaquaductal grey, anterior
nTPM: 5.6
1947 Male, age 18, unknown 5.9
2502 Female, age 75, unknown 5.7
1795 Male, age 51, unknown 5.1
Periaquaductal grey, dorsal
nTPM: 5.9
2850 Male, age 76, both hemispheres 6.7
1831 Male, age 72, unknown 5.9
2464 Female, age 72, unknown 5.9
1840 Male, age 53, unknown 4.9
Periaquaductal grey, lateral
nTPM: 6.4
2140 Male, age 76, both hemispheres 6.9
2272 Male, age 74, both hemispheres 6.7
2053 Male, age 18, unknown 5.7
Pretectal area
nTPM: 6.2
2667 Female, age 75, unknown 7.7
2825 Male, age 18, unknown 7.3
2316 Male, age 76, right hemisphere 6.9
2273 Male, age 74, both hemispheres 6.8
1816 Male, age 51, unknown 6.5
2224 Female, age 72, unknown 6.5
1815 Male, age 53, unknown 6.2
1817 Female, age 42, unknown 5.8
1944 Female, age 72, unknown 5.4
2007 Male, age 72, unknown 4.8
2407 Male, age 75, both hemispheres 4.5
Red nucleus
nTPM: 6.2
2584 Male, age 75, left hemisphere 8.5
2823 Male, age 76, right hemisphere 8.0
2725 Female, age 75, unknown 6.6
2769 Male, age 72, unknown 6.5
2588 Male, age 74, left hemisphere 6.4
1954 Female, age 42, unknown 5.9
1904 Male, age 53, unknown 5.7
2227 Male, age 72, unknown 5.7
1865 Male, age 51, unknown 5.6
2503 Female, age 72, unknown 5.4
1821 Female, age 72, unknown 5.1
2785 Male, age 18, unknown 4.9
Substantia nigra
nTPM: 6.6
2241 Male, age 72, unknown 9.0
2665 Male, age 74, both hemispheres 8.9
2699 Male, age 18, unknown 8.0
1851 Male, age 51, unknown 7.6
1889 Female, age 72, unknown 6.7
2583 Male, age 75, right hemisphere 6.2
1941 Male, age 53, unknown 5.8
2590 Female, age 75, unknown 5.8
1916 Female, age 42, unknown 5.4
2409 Female, age 72, unknown 2.8
Superior colliculus
nTPM: 6.7
1796 Male, age 53, unknown 8.8
2664 Male, age 75, both hemispheres 8.0
2587 Male, age 74, left hemisphere 7.4
1839 Male, age 51, unknown 7.2
1895 Male, age 76, right hemisphere 7.1
2087 Female, age 72, unknown 6.6
1913 Female, age 42, unknown 6.2
1995 Male, age 72, unknown 5.7
2261 Male, age 18, unknown 5.2
2668 Female, age 75, unknown 5.1
Ventral tegmental area
nTPM: 7.0
2021 Male, age 53, unknown 8.4
1915 Female, age 42, unknown 7.8
2218 Male, age 76, both hemispheres 7.0
1942 Male, age 51, unknown 6.7
2410 Female, age 72, unknown 6.4
2223 Female, age 72, unknown 5.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 139

Max nTPM: 49.4
Min nTPM: 16.6
Std nTPM: 5.7
Median nTPM: 27.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 45.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 43.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 42.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 38.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 38.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 37.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 36.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.3
FF:10158-103A5 76 years, female 16.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 30.2
Min nTPM: 23.9
Sample A Female 28.7
Sample B Female 23.9
Sample C Male 30.2
Sample D Male 28.2
Periaqueductal gray
nTPM: 23.5
Samples: 3

Max nTPM: 26.1
Min nTPM: 22.0
Sample B Female 22.5
Sample C Male 26.1
Sample D Male 22.0
Substantia nigra
nTPM: 27.8
Samples: 4

Max nTPM: 30.6
Min nTPM: 26.3
Sample A Female 26.3
Sample B Female 26.3
Sample C Male 30.6
Sample D Male 28.0
Superior colliculi
nTPM: 29.6
Samples: 4

Max nTPM: 30.6
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 30.1
Sample C Male 29.1
Sample D Male 30.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.8
Sample A Male 16.2
Sample B Male 13.8
Sample C Female 15.2
Sample D Female 18.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
69059953 Antisense, RP_050317_04_G01, Mouse strain C57BL/6J (56 days, male) 5.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.