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SMIM7
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:41.8 nTPM
HPA:41.8 nTPM
GTEx:23.0 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:63.7 nTPM
Mouse:101.3 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043127
Glial cells Low
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.2
2481 Female, age 94, left hemisphere 43.9
2290 Female, age 72, unknown 38.7
1857 Female, age 85, left hemisphere 37.8
2288 Male, age 75, left hemisphere 37.5
2289 Male, age 61, right hemisphere 37.3
1854 Male, age 80, left hemisphere 37.2
2846 Female, age 79, unknown 37.1
1781 Male, age 74, unknown 36.1
Claustrum
nTPM: 37.3
2491 Male, age 75, both hemispheres 38.6
2392 Female, age 94, both hemispheres 38.2
2292 Female, age 85, both hemispheres 37.7
1956 Male, age 74, unknown 37.6
2196 Female, age 79, unknown 37.6
2198 Male, age 80, both hemispheres 37.4
2284 Female, age 91, both hemispheres 36.3
2645 Female, age 72, unknown 36.3
2568 Male, age 61, both hemispheres 36.2
Globus pallidus, externus
nTPM: 41.6
2646 Male, age 61, right hemisphere 42.5
2772 Female, age 79, unknown 42.3
1996 Male, age 80, right hemisphere 41.9
2567 Female, age 72, unknown 40.9
2395 Male, age 75, both hemispheres 40.6
Globus pallidus, internus
nTPM: 41.8
2483 Female, age 94, right hemisphere 47.6
2111 Female, age 85, right hemisphere 42.5
2778 Female, age 91, both hemispheres 41.5
2287 Male, age 75, right hemisphere 40.8
2037 Male, age 80, right hemisphere 40.4
1818 Male, age 74, unknown 40.3
2566 Female, age 72, unknown 39.5
Nucleus accumbens
nTPM: 38.6
2286 Male, age 75, left hemisphere 39.9
2391 Female, age 94, left hemisphere 39.8
2824 Male, age 61, right hemisphere 39.7
1806 Female, age 85, left hemisphere 38.5
1783 Male, age 74, unknown 37.8
1856 Female, age 91, right hemisphere 37.7
2698 Female, age 72, unknown 37.6
2732 Male, age 80, right hemisphere 37.5
Nucleus basalis of Meynert
nTPM: 39.5
2569 Male, age 61, both hemispheres 42.7
2393 Male, age 80, right hemisphere 40.8
2821 Male, age 75, both hemispheres 37.6
2484 Female, age 94, left hemisphere 36.8
Nucleus of the diagonal band
nTPM: 37.4
2775 Male, age 80, right hemisphere 38.5
1812 Female, age 91, both hemispheres 37.8
2029 Male, age 61, right hemisphere 37.5
1979 Male, age 74, unknown 36.8
2195 Female, age 85, both hemispheres 36.4
Olfactory tubercle
nTPM: 37.2
1846 Male, age 80, right hemisphere 39.3
1998 Female, age 91, both hemispheres 37.6
2856 Male, age 75, right hemisphere 37.2
2487 Female, age 94, left hemisphere 34.6
Putamen
nTPM: 38.6
2482 Female, age 94, left hemisphere 43.5
2647 Male, age 75, left hemisphere 38.7
1829 Male, age 74, unknown 38.5
1937 Female, age 91, right hemisphere 38.0
2466 Female, age 79, unknown 37.8
1838 Male, age 80, right hemisphere 37.0
2489 Female, age 72, unknown 36.7
Septal nuclei
nTPM: 37.6
2059 Female, age 85, both hemispheres 39.3
1960 Male, age 74, unknown 38.0
2199 Male, age 80, right hemisphere 37.6
2629 Female, age 94, right hemisphere 37.5
2031 Female, age 72, unknown 37.4
2009 Female, age 91, both hemispheres 37.0
2394 Male, age 61, left hemisphere 36.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.0
Samples: 246

Max nTPM: 55.1
Min nTPM: 8.3
Std nTPM: 7.1
Median nTPM: 19.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 55.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 41.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 40.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 40.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 39.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 39.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 38.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 37.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 37.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 36.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.9
Samples: 246

Max nTPM: 50.9
Min nTPM: 7.4
Std nTPM: 7.7
Median nTPM: 19.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 50.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 49.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 47.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 45.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 44.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 43.3
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 42.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 38.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 38.6
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 38.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 38.3
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Brain - Putamen (basal ganglia)
Average nTPM: 23.0
Samples: 205

Max nTPM: 64.0
Min nTPM: 7.2
Std nTPM: 8.8
Median nTPM: 21.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 64.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 53.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 52.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 51.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 45.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 44.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 42.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 41.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 41.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 39.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 39.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.0
FF:10164-103B2 76 years, female 77.0
Globus pallidus
Scaled Tags Per Million: 73.5
FF:10175-103C4 60 years, female 90.7
FF:10161-103A8 76 years, female 56.3
Nucleus accumbens
Scaled Tags Per Million: 100.6
FF:10037-101F1 23-56 years, mixed 100.6
Putamen
Scaled Tags Per Million: 78.4
FF:10176-103C5 60 years, female 78.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 63.7
Pig sample Sample description nTPM
Caudate
nTPM: 47.5
Samples: 4

Max nTPM: 54.8
Min nTPM: 40.9
Sample A Female 48.9
Sample B Female 40.9
Sample C Male 54.8
Sample D Male 45.2
Putamen
nTPM: 63.7
Samples: 4

Max nTPM: 78.9
Min nTPM: 47.1
Sample A Female 68.0
Sample B Female 47.1
Sample C Male 78.9
Sample D Male 60.9
Septum
nTPM: 54.7
Samples: 4

Max nTPM: 60.7
Min nTPM: 48.7
Sample A Female 60.7
Sample B Female 48.7
Sample C Male 54.4
Sample D Male 55.1
Ventral pallidum
nTPM: 55.0
Samples: 4

Max nTPM: 59.1
Min nTPM: 47.0
Sample A Female 47.0
Sample B Female 59.1
Sample C Male 56.9
Sample D Male 56.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.3
Samples: 4

Max nTPM: 107.1
Min nTPM: 93.5
Sample A Male 98.0
Sample B Male 93.5
Sample C Female 107.1
Sample D Female 106.4
Septum
nTPM: 89.0
Samples: 4

Max nTPM: 100.1
Min nTPM: 81.2
Sample A Male 81.6
Sample B Male 100.1
Sample C Female 93.0
Sample D Female 81.2
Ventral forebrain
nTPM: 96.4
Samples: 4

Max nTPM: 109.2
Min nTPM: 89.3
Sample A Male 89.3
Sample B Male 95.6
Sample C Female 109.2
Sample D Female 91.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69446352 Antisense, RP_050419_01_D12, Mouse strain C57BL/6J (56 days, male) 0.3
70919663 Antisense, RP_050713_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
69446352 Antisense, RP_050419_01_D12, Mouse strain C57BL/6J (56 days, male) 0.2
70919663 Antisense, RP_050713_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.