ABOUTMENU
HELP
NEWS
SMIM7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.1 nTPM
HPA:41.1 nTPM
GTEx:28.9 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:74.2 nTPM
Mouse:72.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2019 Male, age 18, unknown 41.5
2411 Female, age 72, unknown 40.3
1827 Male, age 72, unknown 40.1
2828 Female, age 72, unknown 40.1
2586 Male, age 75, left hemisphere 40.0
1870 Female, age 42, unknown 39.9
1833 Male, age 53, unknown 39.0
1830 Male, age 51, unknown 38.5
2666 Male, age 74, left hemisphere 37.9
2219 Male, age 76, both hemispheres 35.9
Dorsal raphe nucleus
nTPM: 38.8
1828 Male, age 53, unknown 39.8
2298 Female, age 72, unknown 39.1
2016 Female, age 72, unknown 38.5
2047 Male, age 72, unknown 38.3
2750 Male, age 76, both hemispheres 38.2
Inferior colliculus
nTPM: 38.3
1890 Male, age 53, unknown 39.9
2097 Female, age 72, unknown 39.6
1848 Female, age 42, unknown 38.8
2849 Male, age 72, unknown 34.8
Median raphe nucleus
nTPM: 38.9
2220 Male, age 76, midline 38.9
Pedunculopontine tegmental nucleus
nTPM: 39.9
2338 Male, age 61, both hemispheres 42.3
1921 Female, age 85, both hemispheres 38.8
2334 Male, age 80, both hemispheres 38.7
Periaquaductal grey, anterior
nTPM: 38.7
1947 Male, age 18, unknown 39.2
1795 Male, age 51, unknown 38.8
2502 Female, age 75, unknown 38.2
Periaquaductal grey, dorsal
nTPM: 37.6
1840 Male, age 53, unknown 38.1
1831 Male, age 72, unknown 37.8
2464 Female, age 72, unknown 37.6
2850 Male, age 76, both hemispheres 36.7
Periaquaductal grey, lateral
nTPM: 37.1
2140 Male, age 76, both hemispheres 38.4
2053 Male, age 18, unknown 37.1
2272 Male, age 74, both hemispheres 35.9
Pretectal area
nTPM: 38.6
1817 Female, age 42, unknown 39.8
2667 Female, age 75, unknown 39.7
2316 Male, age 76, right hemisphere 39.5
2007 Male, age 72, unknown 39.3
1816 Male, age 51, unknown 38.8
1815 Male, age 53, unknown 38.7
2407 Male, age 75, both hemispheres 38.4
2273 Male, age 74, both hemispheres 37.7
1944 Female, age 72, unknown 37.6
2224 Female, age 72, unknown 37.4
2825 Male, age 18, unknown 37.3
Red nucleus
nTPM: 41.1
1821 Female, age 72, unknown 43.6
1904 Male, age 53, unknown 42.9
2588 Male, age 74, left hemisphere 42.3
2503 Female, age 72, unknown 42.1
2785 Male, age 18, unknown 41.4
2823 Male, age 76, right hemisphere 41.4
2227 Male, age 72, unknown 41.3
1954 Female, age 42, unknown 41.1
2769 Male, age 72, unknown 41.1
1865 Male, age 51, unknown 40.5
2725 Female, age 75, unknown 38.5
2584 Male, age 75, left hemisphere 37.4
Substantia nigra
nTPM: 41.0
2590 Female, age 75, unknown 42.8
2409 Female, age 72, unknown 42.5
1916 Female, age 42, unknown 42.4
1851 Male, age 51, unknown 42.0
2665 Male, age 74, both hemispheres 41.5
2241 Male, age 72, unknown 41.2
2583 Male, age 75, right hemisphere 40.8
1889 Female, age 72, unknown 39.9
2699 Male, age 18, unknown 38.7
1941 Male, age 53, unknown 37.6
Superior colliculus
nTPM: 38.9
1995 Male, age 72, unknown 41.1
2261 Male, age 18, unknown 39.4
2664 Male, age 75, both hemispheres 39.2
2668 Female, age 75, unknown 39.0
1895 Male, age 76, right hemisphere 38.9
1913 Female, age 42, unknown 38.9
2087 Female, age 72, unknown 38.2
2587 Male, age 74, left hemisphere 38.2
1839 Male, age 51, unknown 38.1
1796 Male, age 53, unknown 37.8
Ventral tegmental area
nTPM: 40.0
1915 Female, age 42, unknown 41.6
1942 Male, age 51, unknown 40.8
2223 Female, age 72, unknown 40.6
2410 Female, age 72, unknown 39.7
2021 Male, age 53, unknown 39.4
2218 Male, age 76, both hemispheres 37.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.9
Samples: 139

Max nTPM: 65.1
Min nTPM: 13.4
Std nTPM: 9.6
Median nTPM: 27.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 65.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 61.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 52.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 49.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 44.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 44.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 43.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.8
FF:10158-103A5 76 years, female 70.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.2
Pig sample Sample description nTPM
Midbrain
nTPM: 74.2
Samples: 4

Max nTPM: 113.3
Min nTPM: 53.2
Sample A Female 113.3
Sample B Female 69.0
Sample C Male 61.4
Sample D Male 53.2
Periaqueductal gray
nTPM: 59.3
Samples: 3

Max nTPM: 62.0
Min nTPM: 56.2
Sample B Female 62.0
Sample C Male 59.8
Sample D Male 56.2
Substantia nigra
nTPM: 71.2
Samples: 4

Max nTPM: 85.9
Min nTPM: 64.1
Sample A Female 85.9
Sample B Female 64.1
Sample C Male 65.5
Sample D Male 69.2
Superior colliculi
nTPM: 72.8
Samples: 4

Max nTPM: 80.3
Min nTPM: 66.0
Sample A Female 80.3
Sample B Female 67.3
Sample C Male 77.4
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.4
Samples: 4

Max nTPM: 76.1
Min nTPM: 65.3
Sample A Male 74.7
Sample B Male 73.6
Sample C Female 65.3
Sample D Female 76.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69446352 Antisense, RP_050419_01_D12, Mouse strain C57BL/6J (56 days, male) 0.1
70919663 Antisense, RP_050713_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.