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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:18.1 nTPM
HPA:18.1 nTPM
GTEx:21.8 nTPM
FANTOM5:116.7 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:119.8 nTPM
Allen mouse:8.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043900Antibody CAB004541
Glial cells LowMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.2
2846 Female, age 79, unknown 16.0
2481 Female, age 94, left hemisphere 14.1
2288 Male, age 75, left hemisphere 13.3
1857 Female, age 85, left hemisphere 12.5
1781 Male, age 74, unknown 12.4
2290 Female, age 72, unknown 11.5
1854 Male, age 80, left hemisphere 9.9
2289 Male, age 61, right hemisphere 8.2
Claustrum
nTPM: 13.1
2198 Male, age 80, both hemispheres 16.1
1956 Male, age 74, unknown 15.4
2284 Female, age 91, both hemispheres 13.4
2196 Female, age 79, unknown 13.3
2491 Male, age 75, both hemispheres 13.0
2568 Male, age 61, both hemispheres 12.4
2392 Female, age 94, both hemispheres 12.2
2645 Female, age 72, unknown 11.4
2292 Female, age 85, both hemispheres 10.3
Globus pallidus, externus
nTPM: 6.0
2395 Male, age 75, both hemispheres 10.6
2772 Female, age 79, unknown 9.4
1996 Male, age 80, right hemisphere 4.4
2646 Male, age 61, right hemisphere 3.5
2567 Female, age 72, unknown 2.1
Globus pallidus, internus
nTPM: 7.2
2287 Male, age 75, right hemisphere 14.4
2483 Female, age 94, right hemisphere 11.9
1818 Male, age 74, unknown 6.3
2778 Female, age 91, both hemispheres 5.8
2566 Female, age 72, unknown 4.9
2111 Female, age 85, right hemisphere 3.6
2037 Male, age 80, right hemisphere 3.2
Nucleus accumbens
nTPM: 13.2
1856 Female, age 91, right hemisphere 17.6
2824 Male, age 61, right hemisphere 16.5
1783 Male, age 74, unknown 15.7
2286 Male, age 75, left hemisphere 15.5
2698 Female, age 72, unknown 12.2
1806 Female, age 85, left hemisphere 11.7
2391 Female, age 94, left hemisphere 10.4
2732 Male, age 80, right hemisphere 6.2
Nucleus basalis of Meynert
nTPM: 8.5
2484 Female, age 94, left hemisphere 11.2
2821 Male, age 75, both hemispheres 10.5
2393 Male, age 80, right hemisphere 9.5
2569 Male, age 61, both hemispheres 2.8
Nucleus of the diagonal band
nTPM: 18.1
1812 Female, age 91, both hemispheres 22.2
2775 Male, age 80, right hemisphere 21.8
2195 Female, age 85, both hemispheres 18.9
2029 Male, age 61, right hemisphere 15.4
1979 Male, age 74, unknown 12.3
Olfactory tubercle
nTPM: 16.4
1998 Female, age 91, both hemispheres 21.0
1846 Male, age 80, right hemisphere 18.2
2487 Female, age 94, left hemisphere 16.4
2856 Male, age 75, right hemisphere 10.1
Putamen
nTPM: 12.0
2466 Female, age 79, unknown 16.8
1838 Male, age 80, right hemisphere 15.0
1829 Male, age 74, unknown 13.1
1937 Female, age 91, right hemisphere 12.8
2482 Female, age 94, left hemisphere 12.0
2647 Male, age 75, left hemisphere 8.5
2489 Female, age 72, unknown 6.0
Septal nuclei
nTPM: 15.6
2031 Female, age 72, unknown 24.2
1960 Male, age 74, unknown 23.9
2629 Female, age 94, right hemisphere 18.2
2009 Female, age 91, both hemispheres 16.4
2059 Female, age 85, both hemispheres 11.8
2394 Male, age 61, left hemisphere 7.6
2199 Male, age 80, right hemisphere 7.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.1
Samples: 246

Max nTPM: 59.1
Min nTPM: 3.6
Std nTPM: 9.2
Median nTPM: 14.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 59.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 47.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 43.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 42.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 40.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 40.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 40.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 39.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 37.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 36.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 35.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.8
Samples: 246

Max nTPM: 55.0
Min nTPM: 0.4
Std nTPM: 12.8
Median nTPM: 20.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 55.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 53.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 51.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 50.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 48.1
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 47.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 47.6
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 46.5
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 46.2
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 45.7
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 45.7
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Brain - Putamen (basal ganglia)
Average nTPM: 15.7
Samples: 205

Max nTPM: 40.9
Min nTPM: 5.0
Std nTPM: 8.2
Median nTPM: 13.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 40.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 37.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 35.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 35.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 34.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 34.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 33.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 33.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 32.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 32.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 32.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.1
FF:10164-103B2 76 years, female 59.1
Globus pallidus
Scaled Tags Per Million: 53.0
FF:10175-103C4 60 years, female 66.3
FF:10161-103A8 76 years, female 39.7
Nucleus accumbens
Scaled Tags Per Million: 116.7
FF:10037-101F1 23-56 years, mixed 116.7
Putamen
Scaled Tags Per Million: 104.4
FF:10176-103C5 60 years, female 104.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.1
Pig sample Sample description nTPM
Caudate
nTPM: 41.1
Samples: 4

Max nTPM: 48.2
Min nTPM: 36.1
Sample A Female 36.1
Sample B Female 41.3
Sample C Male 48.2
Sample D Male 38.7
Putamen
nTPM: 40.1
Samples: 4

Max nTPM: 52.5
Min nTPM: 27.6
Sample A Female 27.6
Sample B Female 36.8
Sample C Male 52.5
Sample D Male 43.6
Septum
nTPM: 37.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 31.7
Sample A Female 36.9
Sample B Female 31.7
Sample C Male 46.7
Sample D Male 36.3
Ventral pallidum
nTPM: 36.6
Samples: 4

Max nTPM: 43.0
Min nTPM: 32.7
Sample A Female 35.5
Sample B Female 35.0
Sample C Male 43.0
Sample D Male 32.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 119.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 102.6
Samples: 4

Max nTPM: 106.5
Min nTPM: 99.8
Sample A Male 101.5
Sample B Male 106.5
Sample C Female 99.8
Sample D Female 102.7
Septum
nTPM: 119.8
Samples: 4

Max nTPM: 123.9
Min nTPM: 109.7
Sample A Male 123.9
Sample B Male 123.9
Sample C Female 121.6
Sample D Female 109.7
Ventral forebrain
nTPM: 113.1
Samples: 4

Max nTPM: 124.7
Min nTPM: 101.9
Sample A Male 101.9
Sample B Male 113.6
Sample C Female 124.7
Sample D Female 112.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.1
70430702 Antisense, RP_050614_01_H05, Mouse strain C57BL/6J (56 days, male) 8.1
Pallidum
Expression energy: 7.0
70430702 Antisense, RP_050614_01_H05, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.