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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:37.6 nTPM
HPA:37.6 nTPM
GTEx:42.5 nTPM
FANTOM5:50.9 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:91.8 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026661
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.8
2288 Male, age 75, left hemisphere 41.8
2289 Male, age 61, right hemisphere 38.9
2846 Female, age 79, unknown 36.0
2481 Female, age 94, left hemisphere 35.5
1854 Male, age 80, left hemisphere 34.6
2290 Female, age 72, unknown 34.6
1781 Male, age 74, unknown 33.9
1857 Female, age 85, left hemisphere 31.0
Claustrum
nTPM: 33.2
2568 Male, age 61, both hemispheres 36.4
2284 Female, age 91, both hemispheres 35.7
2292 Female, age 85, both hemispheres 35.5
2491 Male, age 75, both hemispheres 35.0
1956 Male, age 74, unknown 32.3
2196 Female, age 79, unknown 31.9
2198 Male, age 80, both hemispheres 31.3
2645 Female, age 72, unknown 31.2
2392 Female, age 94, both hemispheres 29.1
Globus pallidus, externus
nTPM: 36.4
2567 Female, age 72, unknown 46.5
1996 Male, age 80, right hemisphere 38.2
2646 Male, age 61, right hemisphere 34.7
2772 Female, age 79, unknown 32.3
2395 Male, age 75, both hemispheres 30.4
Globus pallidus, internus
nTPM: 34.6
2566 Female, age 72, unknown 36.5
2287 Male, age 75, right hemisphere 35.4
2778 Female, age 91, both hemispheres 35.1
2111 Female, age 85, right hemisphere 34.8
2483 Female, age 94, right hemisphere 34.4
2037 Male, age 80, right hemisphere 33.6
1818 Male, age 74, unknown 32.7
Nucleus accumbens
nTPM: 32.8
2286 Male, age 75, left hemisphere 37.7
1783 Male, age 74, unknown 33.5
2824 Male, age 61, right hemisphere 33.4
1806 Female, age 85, left hemisphere 33.2
2391 Female, age 94, left hemisphere 32.3
2698 Female, age 72, unknown 31.5
2732 Male, age 80, right hemisphere 31.3
1856 Female, age 91, right hemisphere 29.3
Nucleus basalis of Meynert
nTPM: 36.2
2484 Female, age 94, left hemisphere 40.7
2569 Male, age 61, both hemispheres 36.0
2393 Male, age 80, right hemisphere 34.7
2821 Male, age 75, both hemispheres 33.2
Nucleus of the diagonal band
nTPM: 29.2
1979 Male, age 74, unknown 32.7
2029 Male, age 61, right hemisphere 29.8
2195 Female, age 85, both hemispheres 29.0
2775 Male, age 80, right hemisphere 28.1
1812 Female, age 91, both hemispheres 26.3
Olfactory tubercle
nTPM: 31.3
1998 Female, age 91, both hemispheres 33.8
2487 Female, age 94, left hemisphere 31.4
2856 Male, age 75, right hemisphere 30.5
1846 Male, age 80, right hemisphere 29.6
Putamen
nTPM: 37.6
2489 Female, age 72, unknown 42.9
2647 Male, age 75, left hemisphere 41.1
2466 Female, age 79, unknown 37.4
1829 Male, age 74, unknown 36.8
1838 Male, age 80, right hemisphere 36.3
2482 Female, age 94, left hemisphere 34.8
1937 Female, age 91, right hemisphere 33.9
Septal nuclei
nTPM: 30.2
2059 Female, age 85, both hemispheres 32.6
1960 Male, age 74, unknown 31.5
2629 Female, age 94, right hemisphere 30.1
2394 Male, age 61, left hemisphere 29.5
2199 Male, age 80, right hemisphere 29.4
2009 Female, age 91, both hemispheres 29.1
2031 Female, age 72, unknown 29.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.1
Samples: 246

Max nTPM: 70.5
Min nTPM: 14.0
Std nTPM: 10.8
Median nTPM: 31.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 70.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 68.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 66.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 61.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 60.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 60.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 59.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 57.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 56.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 55.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 55.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.7
Samples: 246

Max nTPM: 65.9
Min nTPM: 10.1
Std nTPM: 8.9
Median nTPM: 27.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 65.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 61.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 55.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 55.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 51.3
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 51.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 49.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 48.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 48.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 48.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 46.6
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Brain - Putamen (basal ganglia)
Average nTPM: 42.5
Samples: 205

Max nTPM: 93.6
Min nTPM: 17.1
Std nTPM: 13.3
Median nTPM: 40.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 93.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 87.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 86.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 74.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 73.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 73.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 69.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 68.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 67.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 66.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 65.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.1
FF:10164-103B2 76 years, female 40.1
Globus pallidus
Scaled Tags Per Million: 50.9
FF:10161-103A8 76 years, female 69.5
FF:10175-103C4 60 years, female 32.3
Nucleus accumbens
Scaled Tags Per Million: 32.2
FF:10037-101F1 23-56 years, mixed 32.2
Putamen
Scaled Tags Per Million: 27.0
FF:10176-103C5 60 years, female 27.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Caudate
nTPM: 9.8
Samples: 4

Max nTPM: 13.2
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 9.4
Sample C Male 13.2
Sample D Male 10.5
Putamen
nTPM: 9.8
Samples: 4

Max nTPM: 14.2
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 8.7
Sample C Male 14.2
Sample D Male 10.8
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.5
Sample A Female 5.2
Sample B Female 6.9
Sample C Male 5.2
Sample D Male 4.5
Ventral pallidum
nTPM: 7.0
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.1
Sample A Female 6.4
Sample B Female 8.2
Sample C Male 6.1
Sample D Male 7.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 91.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 91.8
Samples: 4

Max nTPM: 112.2
Min nTPM: 75.5
Sample A Male 94.7
Sample B Male 112.2
Sample C Female 75.5
Sample D Female 84.7
Septum
nTPM: 38.8
Samples: 4

Max nTPM: 41.1
Min nTPM: 34.8
Sample A Male 41.0
Sample B Male 38.4
Sample C Female 41.1
Sample D Female 34.8
Ventral forebrain
nTPM: 79.5
Samples: 4

Max nTPM: 90.8
Min nTPM: 68.8
Sample A Male 90.8
Sample B Male 70.2
Sample C Female 88.3
Sample D Female 68.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
72002106 Antisense, RP_050915_02_G01, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.0
72002106 Antisense, RP_050915_02_G01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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