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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:87.5 nTPM
HPA:87.5 nTPM
GTEx:67.1 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:29.8 nTPM
Allen mouse:7.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041244
Glial cells Medium
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 87.5
Sample id Sample description nTPM
Hippocampus
nTPM: 86.7
2148 Female, age 91, left hemisphere 90.0
1855 Male, age 76, left hemisphere 87.4
2529 Female, age 94, left hemisphere 86.7
2621 Female, age 67, right hemisphere 86.6
1911 Female, age 85, right hemisphere 86.2
1898 Male, age 80, left hemisphere 83.2
Dentate gyrus
nTPM: 86.5
2531 Female, age 67, both hemispheres 90.2
2528 Male, age 74, both hemispheres 86.7
1927 Female, age 91, both hemispheres 86.0
2010 Male, age 76, both hemispheres 85.6
2530 Female, age 94, left hemisphere 85.5
2246 Female, age 85, both hemispheres 84.8
Entorhinal gyrus
nTPM: 86.7
2613 Female, age 94, left hemisphere 89.4
2764 Male, age 80, right hemisphere 89.1
2686 Male, age 75, right hemisphere 87.4
1787 Male, age 76, left hemisphere 85.5
2117 Female, age 91, right hemisphere 84.9
1938 Female, age 85, left hemisphere 83.8
Hippocampus, CA1
nTPM: 86.3
2045 Male, age 76, both hemispheres 88.7
2082 Female, age 91, right hemisphere 88.4
2527 Male, age 74, both hemispheres 85.7
1873 Female, age 85, both hemispheres 84.3
2749 Male, age 80, left hemisphere 84.2
Hippocampus, CA2
nTPM: 85.4
2113 Female, age 91, right hemisphere 87.1
2437 Female, age 94, left hemisphere 86.8
2249 Male, age 74, both hemispheres 85.6
1940 Female, age 85, left hemisphere 85.3
1892 Male, age 76, both hemispheres 84.0
1963 Male, age 80, left hemisphere 83.8
Hippocampus, CA3
nTPM: 87.5
2620 Female, age 94, left hemisphere 93.5
2861 Female, age 67, both hemispheres 88.2
1891 Female, age 85, both hemispheres 86.3
2436 Male, age 74, both hemispheres 86.3
1867 Male, age 76, both hemispheres 85.9
2137 Male, age 80, left hemisphere 85.0
Parahippocampal cortex
nTPM: 86.2
2622 Female, age 67, right hemisphere 90.6
2693 Female, age 94, both hemispheres 88.3
2692 Male, age 74, both hemispheres 87.2
2532 Female, age 72, left hemisphere 86.4
1990 Female, age 91, right hemisphere 85.7
2245 Female, age 91, both hemispheres 85.5
1850 Male, age 80, both hemispheres 85.3
2018 Male, age 76, both hemispheres 84.8
2250 Female, age 67, right hemisphere 84.7
1933 Female, age 85, both hemispheres 83.3
Perirhinal gyrus
nTPM: 85.1
2848 Male, age 76, right hemisphere 86.1
2521 Female, age 94, right hemisphere 85.7
1794 Male, age 80, right hemisphere 85.1
1847 Female, age 91, left hemisphere 84.6
1841 Female, age 85, right hemisphere 84.0
Subiculum
nTPM: 86.3
2619 Male, age 74, both hemispheres 88.3
2729 Female, age 91, right hemisphere 88.3
2438 Female, age 94, left hemisphere 86.5
2042 Male, age 76, both hemispheres 85.8
1901 Male, age 80, both hemispheres 85.3
1977 Female, age 85, both hemispheres 83.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 67.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 67.1
Samples: 197

Max nTPM: 138.0
Min nTPM: 25.2
Std nTPM: 20.3
Median nTPM: 64.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 138.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 131.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 130.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 124.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 122.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 120.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 113.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 108.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 107.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 103.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 101.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.5
FF:10153-102I9 76 years, female 47.8
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.5
Sample A Female 10.4
Sample B Female 9.6
Sample C Male 10.4
Sample D Male 8.5
Entorhinal cortex
nTPM: 9.7
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.9
Sample A Female 10.8
Sample B Female 8.9
Sample C Male 9.5
Sample D Male 9.4
Subiculum
nTPM: 10.1
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.2
Sample A Female 11.1
Sample B Female 9.2
Sample C Male 10.4
Sample D Male 9.5
Ventral hippocampus
nTPM: 10.6
Samples: 4

Max nTPM: 12.9
Min nTPM: 7.9
Sample A Female 10.0
Sample B Female 7.9
Sample C Male 12.9
Sample D Male 11.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.1
Samples: 4

Max nTPM: 30.4
Min nTPM: 25.6
Sample A Male 28.3
Sample B Male 28.2
Sample C Female 25.6
Sample D Female 30.4
Hippocampal formation
nTPM: 29.8
Samples: 4

Max nTPM: 35.2
Min nTPM: 24.5
Sample A Male 24.5
Sample B Male 35.2
Sample C Female 29.9
Sample D Female 29.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
73834511 Antisense, RP_051212_04_A10, Mouse strain C57BL/6J (56 days, male) 9.3
74359365 Antisense, RP_051219_04_E07, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.