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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.3 nTPM
HPA:7.3 nTPM
GTEx:14.6 nTPM
FANTOM5:50.4 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:21.2 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054681
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.3
Sample id Sample description nTPM
Hippocampus
nTPM: 6.9
1898 Male, age 80, left hemisphere 7.3
2529 Female, age 94, left hemisphere 7.2
1855 Male, age 76, left hemisphere 7.0
2621 Female, age 67, right hemisphere 6.9
2148 Female, age 91, left hemisphere 6.5
1911 Female, age 85, right hemisphere 6.4
Dentate gyrus
nTPM: 6.4
2010 Male, age 76, both hemispheres 7.4
1927 Female, age 91, both hemispheres 6.7
2246 Female, age 85, both hemispheres 6.6
2530 Female, age 94, left hemisphere 6.4
2531 Female, age 67, both hemispheres 6.0
2528 Male, age 74, both hemispheres 5.4
Entorhinal gyrus
nTPM: 6.3
1938 Female, age 85, left hemisphere 7.1
2764 Male, age 80, right hemisphere 6.5
2613 Female, age 94, left hemisphere 6.2
2686 Male, age 75, right hemisphere 6.2
1787 Male, age 76, left hemisphere 6.1
2117 Female, age 91, right hemisphere 5.6
Hippocampus, CA1
nTPM: 7.0
2749 Male, age 80, left hemisphere 8.0
2527 Male, age 74, both hemispheres 7.1
1873 Female, age 85, both hemispheres 7.0
2082 Female, age 91, right hemisphere 6.5
2045 Male, age 76, both hemispheres 6.3
Hippocampus, CA2
nTPM: 7.3
1892 Male, age 76, both hemispheres 8.5
1963 Male, age 80, left hemisphere 8.2
2437 Female, age 94, left hemisphere 7.4
2113 Female, age 91, right hemisphere 6.8
1940 Female, age 85, left hemisphere 6.7
2249 Male, age 74, both hemispheres 6.4
Hippocampus, CA3
nTPM: 7.0
2137 Male, age 80, left hemisphere 8.5
2861 Female, age 67, both hemispheres 7.5
1891 Female, age 85, both hemispheres 7.1
2436 Male, age 74, both hemispheres 6.5
2620 Female, age 94, left hemisphere 6.4
1867 Male, age 76, both hemispheres 6.3
Parahippocampal cortex
nTPM: 7.0
2692 Male, age 74, both hemispheres 8.5
2532 Female, age 72, left hemisphere 7.4
1850 Male, age 80, both hemispheres 7.2
2622 Female, age 67, right hemisphere 7.2
1990 Female, age 91, right hemisphere 6.8
1933 Female, age 85, both hemispheres 6.7
2245 Female, age 91, both hemispheres 6.7
2250 Female, age 67, right hemisphere 6.6
2018 Male, age 76, both hemispheres 6.5
2693 Female, age 94, both hemispheres 6.5
Perirhinal gyrus
nTPM: 6.8
1794 Male, age 80, right hemisphere 7.8
1847 Female, age 91, left hemisphere 7.2
1841 Female, age 85, right hemisphere 7.1
2521 Female, age 94, right hemisphere 6.0
2848 Male, age 76, right hemisphere 5.9
Subiculum
nTPM: 6.4
2619 Male, age 74, both hemispheres 7.5
1977 Female, age 85, both hemispheres 6.8
1901 Male, age 80, both hemispheres 6.3
2729 Female, age 91, right hemisphere 6.0
2042 Male, age 76, both hemispheres 5.7
2438 Female, age 94, left hemisphere 5.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.6
Samples: 197

Max nTPM: 40.9
Min nTPM: 3.3
Std nTPM: 6.3
Median nTPM: 13.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 40.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 39.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 32.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 30.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 28.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 27.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 27.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 27.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 26.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 26.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 26.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 50.4
FF:10169-103B7 60 years, female 72.1
FF:10153-102I9 76 years, female 28.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Female 4.5
Sample B Female 3.3
Sample C Male 3.0
Sample D Male 3.4
Entorhinal cortex
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.6
Sample A Female 3.8
Sample B Female 2.6
Sample C Male 3.0
Sample D Male 3.2
Subiculum
nTPM: 3.5
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.9
Sample A Female 3.8
Sample B Female 2.9
Sample C Male 3.7
Sample D Male 3.4
Ventral hippocampus
nTPM: 3.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.8
Sample A Female 3.6
Sample B Female 2.8
Sample C Male 4.4
Sample D Male 4.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.2
Samples: 4

Max nTPM: 23.1
Min nTPM: 20.0
Sample A Male 23.1
Sample B Male 21.2
Sample C Female 20.4
Sample D Female 20.0
Hippocampal formation
nTPM: 20.0
Samples: 4

Max nTPM: 25.1
Min nTPM: 16.8
Sample A Male 25.1
Sample B Male 20.7
Sample C Female 16.8
Sample D Female 17.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
69202627 Antisense, RP_050324_04_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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