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PAM16
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:37.0 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:36.4 nTPM
Allen mouse:1.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.5
2846 Female, age 79, unknown 19.0
1857 Female, age 85, left hemisphere 18.3
1781 Male, age 74, unknown 17.0
2290 Female, age 72, unknown 16.2
2289 Male, age 61, right hemisphere 16.0
1854 Male, age 80, left hemisphere 15.6
2288 Male, age 75, left hemisphere 15.3
2481 Female, age 94, left hemisphere 15.0
Claustrum
nTPM: 15.3
2392 Female, age 94, both hemispheres 16.0
2645 Female, age 72, unknown 16.0
2491 Male, age 75, both hemispheres 15.9
2198 Male, age 80, both hemispheres 15.3
2284 Female, age 91, both hemispheres 15.2
1956 Male, age 74, unknown 15.0
2568 Male, age 61, both hemispheres 15.0
2292 Female, age 85, both hemispheres 14.9
2196 Female, age 79, unknown 14.7
Globus pallidus, externus
nTPM: 15.6
2567 Female, age 72, unknown 17.5
2646 Male, age 61, right hemisphere 16.2
2395 Male, age 75, both hemispheres 15.7
1996 Male, age 80, right hemisphere 14.4
2772 Female, age 79, unknown 14.4
Globus pallidus, internus
nTPM: 15.4
2566 Female, age 72, unknown 17.8
2778 Female, age 91, both hemispheres 15.5
1818 Male, age 74, unknown 15.3
2287 Male, age 75, right hemisphere 15.1
2037 Male, age 80, right hemisphere 14.9
2111 Female, age 85, right hemisphere 14.8
2483 Female, age 94, right hemisphere 14.4
Nucleus accumbens
nTPM: 16.3
1783 Male, age 74, unknown 19.7
1856 Female, age 91, right hemisphere 18.3
1806 Female, age 85, left hemisphere 17.0
2286 Male, age 75, left hemisphere 15.6
2824 Male, age 61, right hemisphere 15.3
2391 Female, age 94, left hemisphere 15.1
2732 Male, age 80, right hemisphere 15.1
2698 Female, age 72, unknown 14.3
Nucleus basalis of Meynert
nTPM: 15.7
2484 Female, age 94, left hemisphere 16.2
2821 Male, age 75, both hemispheres 15.9
2393 Male, age 80, right hemisphere 15.6
2569 Male, age 61, both hemispheres 15.4
Nucleus of the diagonal band
nTPM: 16.9
2775 Male, age 80, right hemisphere 18.1
2195 Female, age 85, both hemispheres 17.4
1812 Female, age 91, both hemispheres 17.2
2029 Male, age 61, right hemisphere 16.2
1979 Male, age 74, unknown 15.7
Olfactory tubercle
nTPM: 15.4
2856 Male, age 75, right hemisphere 15.9
1998 Female, age 91, both hemispheres 15.8
2487 Female, age 94, left hemisphere 15.1
1846 Male, age 80, right hemisphere 14.9
Putamen
nTPM: 15.9
1838 Male, age 80, right hemisphere 17.9
2489 Female, age 72, unknown 16.7
1937 Female, age 91, right hemisphere 16.6
2466 Female, age 79, unknown 16.2
2647 Male, age 75, left hemisphere 15.9
2482 Female, age 94, left hemisphere 14.9
1829 Male, age 74, unknown 13.3
Septal nuclei
nTPM: 15.5
1960 Male, age 74, unknown 20.0
2009 Female, age 91, both hemispheres 15.2
2031 Female, age 72, unknown 15.0
2199 Male, age 80, right hemisphere 15.0
2394 Male, age 61, left hemisphere 14.7
2629 Female, age 94, right hemisphere 14.6
2059 Female, age 85, both hemispheres 14.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.7
Samples: 246

Max nTPM: 89.5
Min nTPM: 15.2
Std nTPM: 11.6
Median nTPM: 32.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 89.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 84.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 77.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 72.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 69.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 67.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 66.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 64.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 62.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 60.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 59.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.6
Samples: 246

Max nTPM: 78.1
Min nTPM: 11.8
Std nTPM: 11.2
Median nTPM: 34.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 78.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 72.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 69.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 68.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 67.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 66.1
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 65.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 64.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 63.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 62.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 61.5
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Brain - Putamen (basal ganglia)
Average nTPM: 37.0
Samples: 205

Max nTPM: 68.2
Min nTPM: 16.6
Std nTPM: 10.4
Median nTPM: 36.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 68.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 67.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 64.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 61.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 60.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 58.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 58.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 57.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 56.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 56.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 55.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.8
FF:10164-103B2 76 years, female 25.8
Globus pallidus
Scaled Tags Per Million: 19.7
FF:10175-103C4 60 years, female 22.8
FF:10161-103A8 76 years, female 16.6
Nucleus accumbens
Scaled Tags Per Million: 24.2
FF:10037-101F1 23-56 years, mixed 24.2
Putamen
Scaled Tags Per Million: 28.0
FF:10176-103C5 60 years, female 28.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Caudate
nTPM: 34.4
Samples: 4

Max nTPM: 39.8
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 37.7
Sample C Male 39.8
Sample D Male 31.7
Putamen
nTPM: 40.9
Samples: 4

Max nTPM: 55.2
Min nTPM: 31.9
Sample A Female 32.7
Sample B Female 31.9
Sample C Male 55.2
Sample D Male 43.7
Septum
nTPM: 33.1
Samples: 4

Max nTPM: 37.0
Min nTPM: 29.1
Sample A Female 30.6
Sample B Female 35.5
Sample C Male 29.1
Sample D Male 37.0
Ventral pallidum
nTPM: 32.8
Samples: 4

Max nTPM: 37.4
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 37.4
Sample C Male 37.3
Sample D Male 28.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 26.2
Samples: 4

Max nTPM: 38.5
Min nTPM: 16.3
Sample A Male 38.5
Sample B Male 30.6
Sample C Female 19.4
Sample D Female 16.3
Septum
nTPM: 36.4
Samples: 4

Max nTPM: 47.1
Min nTPM: 22.3
Sample A Male 43.1
Sample B Male 47.1
Sample C Female 33.1
Sample D Female 22.3
Ventral forebrain
nTPM: 32.8
Samples: 4

Max nTPM: 43.2
Min nTPM: 19.1
Sample A Male 29.4
Sample B Male 43.2
Sample C Female 19.1
Sample D Female 39.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
2391 Antisense, RP_040604_01_F12, Mouse strain C57BL/6J (56 days, male) 1.8
2392 Antisense, RP_040604_01_F12, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 1.7
2391 Antisense, RP_040604_01_F12, Mouse strain C57BL/6J (56 days, male) 1.7
2392 Antisense, RP_040604_01_F12, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.