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PAM16
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA:16.4 nTPM
GTEx:31.9 nTPM
FANTOM5:22.4 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:30.6 nTPM
Allen mouse:5.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.4
Sample id Sample description nTPM
Hippocampus
nTPM: 16.1
1855 Male, age 76, left hemisphere 18.0
1898 Male, age 80, left hemisphere 17.3
1911 Female, age 85, right hemisphere 15.9
2148 Female, age 91, left hemisphere 15.8
2621 Female, age 67, right hemisphere 15.1
2529 Female, age 94, left hemisphere 14.8
Dentate gyrus
nTPM: 15.8
2010 Male, age 76, both hemispheres 17.5
2531 Female, age 67, both hemispheres 16.1
2246 Female, age 85, both hemispheres 16.0
2530 Female, age 94, left hemisphere 15.5
1927 Female, age 91, both hemispheres 15.2
2528 Male, age 74, both hemispheres 14.2
Entorhinal gyrus
nTPM: 15.7
1938 Female, age 85, left hemisphere 17.0
2613 Female, age 94, left hemisphere 16.5
1787 Male, age 76, left hemisphere 16.4
2686 Male, age 75, right hemisphere 15.3
2764 Male, age 80, right hemisphere 14.5
2117 Female, age 91, right hemisphere 14.3
Hippocampus, CA1
nTPM: 15.0
2749 Male, age 80, left hemisphere 16.8
2082 Female, age 91, right hemisphere 15.9
2527 Male, age 74, both hemispheres 14.6
2045 Male, age 76, both hemispheres 14.1
1873 Female, age 85, both hemispheres 13.7
Hippocampus, CA2
nTPM: 15.6
1892 Male, age 76, both hemispheres 17.6
1940 Female, age 85, left hemisphere 16.1
2437 Female, age 94, left hemisphere 15.4
2113 Female, age 91, right hemisphere 15.2
2249 Male, age 74, both hemispheres 14.6
1963 Male, age 80, left hemisphere 14.4
Hippocampus, CA3
nTPM: 15.8
2620 Female, age 94, left hemisphere 17.8
1867 Male, age 76, both hemispheres 16.8
2137 Male, age 80, left hemisphere 16.5
2436 Male, age 74, both hemispheres 15.2
2861 Female, age 67, both hemispheres 15.0
1891 Female, age 85, both hemispheres 13.3
Parahippocampal cortex
nTPM: 15.6
1933 Female, age 85, both hemispheres 17.1
2693 Female, age 94, both hemispheres 16.7
2622 Female, age 67, right hemisphere 16.2
2250 Female, age 67, right hemisphere 15.8
2692 Male, age 74, both hemispheres 15.5
2018 Male, age 76, both hemispheres 15.3
2532 Female, age 72, left hemisphere 15.3
1850 Male, age 80, both hemispheres 14.9
1990 Female, age 91, right hemisphere 14.9
2245 Female, age 91, both hemispheres 14.2
Perirhinal gyrus
nTPM: 16.4
1841 Female, age 85, right hemisphere 19.0
1794 Male, age 80, right hemisphere 16.5
2848 Male, age 76, right hemisphere 15.8
1847 Female, age 91, left hemisphere 15.4
2521 Female, age 94, right hemisphere 15.2
Subiculum
nTPM: 15.5
1977 Female, age 85, both hemispheres 18.2
2619 Male, age 74, both hemispheres 15.8
1901 Male, age 80, both hemispheres 15.4
2729 Female, age 91, right hemisphere 15.0
2042 Male, age 76, both hemispheres 14.8
2438 Female, age 94, left hemisphere 13.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.9
Samples: 197

Max nTPM: 82.7
Min nTPM: 10.1
Std nTPM: 10.4
Median nTPM: 30.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 82.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 77.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 56.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 56.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 53.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 53.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 53.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 52.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 52.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 52.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 51.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 22.4
FF:10169-103B7 60 years, female 26.1
FF:10153-102I9 76 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.4
Samples: 4

Max nTPM: 52.3
Min nTPM: 28.3
Sample A Female 52.3
Sample B Female 33.6
Sample C Male 39.3
Sample D Male 28.3
Entorhinal cortex
nTPM: 34.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 28.5
Sample A Female 34.8
Sample B Female 36.0
Sample C Male 38.8
Sample D Male 28.5
Subiculum
nTPM: 32.3
Samples: 4

Max nTPM: 44.5
Min nTPM: 26.5
Sample A Female 44.5
Sample B Female 29.8
Sample C Male 28.2
Sample D Male 26.5
Ventral hippocampus
nTPM: 34.2
Samples: 4

Max nTPM: 40.1
Min nTPM: 25.9
Sample A Female 35.8
Sample B Female 25.9
Sample C Male 40.1
Sample D Male 35.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 21.1
Min nTPM: 17.7
Sample A Male 17.7
Sample B Male 20.7
Sample C Female 21.1
Sample D Female 20.2
Hippocampal formation
nTPM: 30.6
Samples: 4

Max nTPM: 38.0
Min nTPM: 22.2
Sample A Male 24.7
Sample B Male 38.0
Sample C Female 22.2
Sample D Female 37.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.0
2391 Antisense, RP_040604_01_F12, Mouse strain C57BL/6J (56 days, male) 5.0
2392 Antisense, RP_040604_01_F12, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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