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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.9 nTPM
HPA:85.9 nTPM
GTEx:63.8 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:66.9 nTPM
Allen mouse:13.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.4
2586 Male, age 75, left hemisphere 76.7
2666 Male, age 74, left hemisphere 58.6
2828 Female, age 72, unknown 47.6
1830 Male, age 51, unknown 45.8
1833 Male, age 53, unknown 45.0
2411 Female, age 72, unknown 44.3
1827 Male, age 72, unknown 43.1
1870 Female, age 42, unknown 40.6
2219 Male, age 76, both hemispheres 38.8
2019 Male, age 18, unknown 33.4
Dorsal raphe nucleus
nTPM: 51.0
2047 Male, age 72, unknown 69.6
2750 Male, age 76, both hemispheres 52.4
2298 Female, age 72, unknown 49.3
1828 Male, age 53, unknown 44.9
2016 Female, age 72, unknown 38.9
Inferior colliculus
nTPM: 45.8
2849 Male, age 72, unknown 51.1
1848 Female, age 42, unknown 50.2
1890 Male, age 53, unknown 42.5
2097 Female, age 72, unknown 39.2
Median raphe nucleus
nTPM: 66.8
2220 Male, age 76, midline 66.8
Pedunculopontine tegmental nucleus
nTPM: 37.6
2334 Male, age 80, both hemispheres 47.5
1921 Female, age 85, both hemispheres 44.9
2338 Male, age 61, both hemispheres 20.3
Periaquaductal grey, anterior
nTPM: 85.9
1947 Male, age 18, unknown 119.2
2502 Female, age 75, unknown 77.5
1795 Male, age 51, unknown 61.0
Periaquaductal grey, dorsal
nTPM: 43.7
1840 Male, age 53, unknown 52.9
2464 Female, age 72, unknown 46.5
2850 Male, age 76, both hemispheres 42.9
1831 Male, age 72, unknown 32.3
Periaquaductal grey, lateral
nTPM: 40.3
2140 Male, age 76, both hemispheres 45.4
2053 Male, age 18, unknown 42.9
2272 Male, age 74, both hemispheres 32.6
Pretectal area
nTPM: 39.3
2825 Male, age 18, unknown 52.9
2316 Male, age 76, right hemisphere 44.4
2407 Male, age 75, both hemispheres 43.1
2667 Female, age 75, unknown 42.5
2224 Female, age 72, unknown 40.4
1816 Male, age 51, unknown 37.9
2007 Male, age 72, unknown 37.0
1815 Male, age 53, unknown 34.9
1817 Female, age 42, unknown 34.8
1944 Female, age 72, unknown 32.6
2273 Male, age 74, both hemispheres 32.3
Red nucleus
nTPM: 46.0
2588 Male, age 74, left hemisphere 56.0
2769 Male, age 72, unknown 51.4
2227 Male, age 72, unknown 50.1
2584 Male, age 75, left hemisphere 49.1
1954 Female, age 42, unknown 47.9
1904 Male, age 53, unknown 46.7
2823 Male, age 76, right hemisphere 45.5
1865 Male, age 51, unknown 45.3
1821 Female, age 72, unknown 45.1
2503 Female, age 72, unknown 44.7
2725 Female, age 75, unknown 37.4
2785 Male, age 18, unknown 32.4
Substantia nigra
nTPM: 36.2
2583 Male, age 75, right hemisphere 41.4
2590 Female, age 75, unknown 41.2
1916 Female, age 42, unknown 39.9
1941 Male, age 53, unknown 39.0
1851 Male, age 51, unknown 38.2
2665 Male, age 74, both hemispheres 36.5
1889 Female, age 72, unknown 35.7
2241 Male, age 72, unknown 33.4
2699 Male, age 18, unknown 29.8
2409 Female, age 72, unknown 26.8
Superior colliculus
nTPM: 42.8
2664 Male, age 75, both hemispheres 63.8
1839 Male, age 51, unknown 53.6
2261 Male, age 18, unknown 44.5
2668 Female, age 75, unknown 44.2
1796 Male, age 53, unknown 42.7
1895 Male, age 76, right hemisphere 42.3
2587 Male, age 74, left hemisphere 38.7
2087 Female, age 72, unknown 35.0
1995 Male, age 72, unknown 34.3
1913 Female, age 42, unknown 28.7
Ventral tegmental area
nTPM: 39.0
2410 Female, age 72, unknown 42.7
1942 Male, age 51, unknown 41.5
2223 Female, age 72, unknown 40.1
2021 Male, age 53, unknown 38.5
2218 Male, age 76, both hemispheres 36.9
1915 Female, age 42, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.8
Samples: 139

Max nTPM: 103.5
Min nTPM: 22.4
Std nTPM: 14.3
Median nTPM: 65.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 103.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 96.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 87.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 86.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 85.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 84.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 84.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 83.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 83.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 82.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 82.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.8
Pig sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 51.2
Min nTPM: 21.9
Sample A Female 21.9
Sample B Female 26.4
Sample C Male 51.2
Sample D Male 47.7
Periaqueductal gray
nTPM: 31.3
Samples: 3

Max nTPM: 34.5
Min nTPM: 27.5
Sample B Female 32.0
Sample C Male 34.5
Sample D Male 27.5
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 39.5
Min nTPM: 22.1
Sample A Female 39.5
Sample B Female 23.2
Sample C Male 28.3
Sample D Male 22.1
Superior colliculi
nTPM: 33.8
Samples: 4

Max nTPM: 45.7
Min nTPM: 16.9
Sample A Female 45.7
Sample B Female 16.9
Sample C Male 35.2
Sample D Male 37.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.9
Samples: 4

Max nTPM: 69.2
Min nTPM: 64.5
Sample A Male 69.2
Sample B Male 64.9
Sample C Female 64.5
Sample D Female 69.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.4
69059974 Antisense, RP_050317_04_H07, Mouse strain C57BL/6J (56 days, male) 13.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.