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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA:35.2 nTPM
GTEx:30.4 nTPM
FANTOM5:395.7 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:0.3 nTPM
Allen mouse:9.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.2
1781 Male, age 74, unknown 63.8
2289 Male, age 61, right hemisphere 48.1
2481 Female, age 94, left hemisphere 37.1
1854 Male, age 80, left hemisphere 31.9
1857 Female, age 85, left hemisphere 27.4
2846 Female, age 79, unknown 27.4
2290 Female, age 72, unknown 24.6
2288 Male, age 75, left hemisphere 21.0
Claustrum
nTPM: 28.3
2292 Female, age 85, both hemispheres 51.7
2196 Female, age 79, unknown 41.1
2198 Male, age 80, both hemispheres 28.9
2284 Female, age 91, both hemispheres 26.3
1956 Male, age 74, unknown 23.6
2645 Female, age 72, unknown 23.1
2491 Male, age 75, both hemispheres 22.2
2392 Female, age 94, both hemispheres 19.3
2568 Male, age 61, both hemispheres 18.3
Globus pallidus, externus
nTPM: 33.9
2772 Female, age 79, unknown 42.5
1996 Male, age 80, right hemisphere 42.1
2395 Male, age 75, both hemispheres 31.7
2646 Male, age 61, right hemisphere 29.5
2567 Female, age 72, unknown 23.8
Globus pallidus, internus
nTPM: 34.5
2037 Male, age 80, right hemisphere 40.1
2778 Female, age 91, both hemispheres 39.5
2483 Female, age 94, right hemisphere 35.7
2566 Female, age 72, unknown 35.0
1818 Male, age 74, unknown 34.0
2287 Male, age 75, right hemisphere 30.6
2111 Female, age 85, right hemisphere 26.6
Nucleus accumbens
nTPM: 24.0
2732 Male, age 80, right hemisphere 42.9
1783 Male, age 74, unknown 26.0
1806 Female, age 85, left hemisphere 25.5
2698 Female, age 72, unknown 22.6
2391 Female, age 94, left hemisphere 22.0
1856 Female, age 91, right hemisphere 21.3
2286 Male, age 75, left hemisphere 17.3
2824 Male, age 61, right hemisphere 14.2
Nucleus basalis of Meynert
nTPM: 32.5
2569 Male, age 61, both hemispheres 36.9
2484 Female, age 94, left hemisphere 34.6
2821 Male, age 75, both hemispheres 31.3
2393 Male, age 80, right hemisphere 27.4
Nucleus of the diagonal band
nTPM: 25.0
1979 Male, age 74, unknown 32.2
1812 Female, age 91, both hemispheres 26.6
2195 Female, age 85, both hemispheres 22.7
2775 Male, age 80, right hemisphere 22.4
2029 Male, age 61, right hemisphere 20.8
Olfactory tubercle
nTPM: 21.3
1846 Male, age 80, right hemisphere 24.3
2856 Male, age 75, right hemisphere 21.6
1998 Female, age 91, both hemispheres 20.2
2487 Female, age 94, left hemisphere 19.2
Putamen
nTPM: 27.5
2482 Female, age 94, left hemisphere 36.3
2489 Female, age 72, unknown 30.6
2466 Female, age 79, unknown 27.2
1937 Female, age 91, right hemisphere 27.1
2647 Male, age 75, left hemisphere 26.3
1838 Male, age 80, right hemisphere 23.5
1829 Male, age 74, unknown 21.7
Septal nuclei
nTPM: 28.4
2199 Male, age 80, right hemisphere 35.5
2394 Male, age 61, left hemisphere 32.2
2059 Female, age 85, both hemispheres 30.4
2009 Female, age 91, both hemispheres 28.9
2031 Female, age 72, unknown 26.2
1960 Male, age 74, unknown 24.6
2629 Female, age 94, right hemisphere 21.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.4
Samples: 246

Max nTPM: 167.8
Min nTPM: 3.5
Std nTPM: 26.2
Median nTPM: 22.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 167.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 140.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 119.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 118.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 110.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 108.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 105.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 93.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 92.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 87.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 86.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.0
Samples: 246

Max nTPM: 167.1
Min nTPM: 3.3
Std nTPM: 25.5
Median nTPM: 18.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 167.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 138.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 124.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 109.9
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 104.4
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 101.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 96.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 87.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 87.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 85.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 83.1
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Brain - Putamen (basal ganglia)
Average nTPM: 29.3
Samples: 205

Max nTPM: 147.5
Min nTPM: 4.3
Std nTPM: 25.4
Median nTPM: 22.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 147.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 130.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 126.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 121.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 100.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 98.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 96.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 87.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 87.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 87.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 81.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 395.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 289.6
FF:10164-103B2 76 years, female 289.6
Globus pallidus
Scaled Tags Per Million: 395.7
FF:10175-103C4 60 years, female 429.4
FF:10161-103A8 76 years, female 362.0
Nucleus accumbens
Scaled Tags Per Million: 58.4
FF:10037-101F1 23-56 years, mixed 58.4
Putamen
Scaled Tags Per Million: 228.9
FF:10176-103C5 60 years, female 228.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Caudate
nTPM: 1.3
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.9
Sample A Female 1.0
Sample B Female 2.1
Sample C Male 1.3
Sample D Male 0.9
Putamen
nTPM: 1.5
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.1
Sample A Female 2.1
Sample B Female 1.1
Sample C Male 1.5
Sample D Male 1.1
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 4.9
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 3.1
Sample C Male 4.9
Sample D Male 4.2
Ventral pallidum
nTPM: 1.9
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 3.4
Sample C Male 2.2
Sample D Male 1.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.4
Sample C Female 0.1
Sample D Female 0.2
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.4
Sample D Female 0.4
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Male 0.3
Sample B Male 0.1
Sample C Female 0.6
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.4
69201630 Antisense, RP_050317_03_C11, Mouse strain C57BL/6J (56 days, male) 13.0
76115722 Antisense, RP_060620_02_B01, Mouse strain C57BL/6J (56 days, male) 5.7
Pallidum
Expression energy: 6.8
69201630 Antisense, RP_050317_03_C11, Mouse strain C57BL/6J (56 days, male) 10.2
76115722 Antisense, RP_060620_02_B01, Mouse strain C57BL/6J (56 days, male) 3.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.