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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.8 nTPM
HPA:35.8 nTPM
GTEx:34.7 nTPM
FANTOM5:266.7 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:1.2 nTPM
Allen mouse:7.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Hippocampus
nTPM: 35.8
1911 Female, age 85, right hemisphere 39.8
1898 Male, age 80, left hemisphere 36.0
1855 Male, age 76, left hemisphere 35.9
2529 Female, age 94, left hemisphere 35.0
2148 Female, age 91, left hemisphere 34.1
2621 Female, age 67, right hemisphere 33.9
Dentate gyrus
nTPM: 34.8
2531 Female, age 67, both hemispheres 40.8
2010 Male, age 76, both hemispheres 39.9
2528 Male, age 74, both hemispheres 35.2
2530 Female, age 94, left hemisphere 34.3
2246 Female, age 85, both hemispheres 30.2
1927 Female, age 91, both hemispheres 28.3
Entorhinal gyrus
nTPM: 28.9
2117 Female, age 91, right hemisphere 38.0
1787 Male, age 76, left hemisphere 36.3
2764 Male, age 80, right hemisphere 27.0
1938 Female, age 85, left hemisphere 26.5
2686 Male, age 75, right hemisphere 25.1
2613 Female, age 94, left hemisphere 20.6
Hippocampus, CA1
nTPM: 32.3
2749 Male, age 80, left hemisphere 37.8
1873 Female, age 85, both hemispheres 36.0
2045 Male, age 76, both hemispheres 33.9
2527 Male, age 74, both hemispheres 28.1
2082 Female, age 91, right hemisphere 25.5
Hippocampus, CA2
nTPM: 29.4
1940 Female, age 85, left hemisphere 36.8
2249 Male, age 74, both hemispheres 34.6
2437 Female, age 94, left hemisphere 30.3
2113 Female, age 91, right hemisphere 27.7
1963 Male, age 80, left hemisphere 26.9
1892 Male, age 76, both hemispheres 20.3
Hippocampus, CA3
nTPM: 33.6
2620 Female, age 94, left hemisphere 43.3
2861 Female, age 67, both hemispheres 37.2
2137 Male, age 80, left hemisphere 32.9
1891 Female, age 85, both hemispheres 31.9
1867 Male, age 76, both hemispheres 28.9
2436 Male, age 74, both hemispheres 27.3
Parahippocampal cortex
nTPM: 25.7
2018 Male, age 76, both hemispheres 36.5
1990 Female, age 91, right hemisphere 31.3
2250 Female, age 67, right hemisphere 28.8
2245 Female, age 91, both hemispheres 28.3
2622 Female, age 67, right hemisphere 26.5
1933 Female, age 85, both hemispheres 24.2
2532 Female, age 72, left hemisphere 22.0
1850 Male, age 80, both hemispheres 21.3
2693 Female, age 94, both hemispheres 19.3
2692 Male, age 74, both hemispheres 19.2
Perirhinal gyrus
nTPM: 24.5
1841 Female, age 85, right hemisphere 28.7
2521 Female, age 94, right hemisphere 27.6
1794 Male, age 80, right hemisphere 25.6
1847 Female, age 91, left hemisphere 20.8
2848 Male, age 76, right hemisphere 19.7
Subiculum
nTPM: 31.2
2729 Female, age 91, right hemisphere 34.4
2042 Male, age 76, both hemispheres 33.5
2619 Male, age 74, both hemispheres 31.4
1977 Female, age 85, both hemispheres 30.2
1901 Male, age 80, both hemispheres 29.7
2438 Female, age 94, left hemisphere 28.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.7
Samples: 197

Max nTPM: 147.6
Min nTPM: 4.0
Std nTPM: 23.4
Median nTPM: 27.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 147.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 138.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 93.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 92.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 89.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 88.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 88.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 86.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 75.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 74.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 74.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 266.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 266.7
FF:10169-103B7 60 years, female 326.4
FF:10153-102I9 76 years, female 207.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 18.5
Samples: 4

Max nTPM: 23.5
Min nTPM: 6.3
Sample A Female 23.5
Sample B Female 22.7
Sample C Male 6.3
Sample D Male 21.3
Entorhinal cortex
nTPM: 2.4
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.6
Sample A Female 3.4
Sample B Female 2.2
Sample C Male 3.4
Sample D Male 0.6
Subiculum
nTPM: 4.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.9
Sample A Female 4.0
Sample B Female 2.9
Sample C Male 4.4
Sample D Male 4.5
Ventral hippocampus
nTPM: 12.7
Samples: 4

Max nTPM: 22.0
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 9.3
Sample C Male 10.4
Sample D Male 22.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.4
Sample B Male 0.3
Sample C Female 0.5
Sample D Female 0.2
Hippocampal formation
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.5
Sample A Male 0.5
Sample B Male 1.2
Sample C Female 1.5
Sample D Female 1.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.6
69201630 Antisense, RP_050317_03_C11, Mouse strain C57BL/6J (56 days, male) 8.5
76115722 Antisense, RP_060620_02_B01, Mouse strain C57BL/6J (56 days, male) 6.7

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