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TEX22
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.8 nTPM
HPA:0.8 nTPM
GTEx:0.5 nTPM
FANTOM5:4.7 Scaled Tags Per Million
Pig:0.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA065576
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.5
2289 Male, age 61, right hemisphere 1.0
1781 Male, age 74, unknown 0.6
1854 Male, age 80, left hemisphere 0.5
2288 Male, age 75, left hemisphere 0.5
2290 Female, age 72, unknown 0.5
1857 Female, age 85, left hemisphere 0.3
2481 Female, age 94, left hemisphere 0.3
2846 Female, age 79, unknown 0.3
Claustrum
nTPM: 0.6
2292 Female, age 85, both hemispheres 0.9
2491 Male, age 75, both hemispheres 0.7
2568 Male, age 61, both hemispheres 0.7
2645 Female, age 72, unknown 0.7
1956 Male, age 74, unknown 0.6
2196 Female, age 79, unknown 0.6
2284 Female, age 91, both hemispheres 0.5
2392 Female, age 94, both hemispheres 0.5
2198 Male, age 80, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.8
2646 Male, age 61, right hemisphere 1.3
2567 Female, age 72, unknown 1.0
1996 Male, age 80, right hemisphere 0.7
2395 Male, age 75, both hemispheres 0.6
2772 Female, age 79, unknown 0.6
Globus pallidus, internus
nTPM: 0.6
2566 Female, age 72, unknown 0.8
2778 Female, age 91, both hemispheres 0.8
2111 Female, age 85, right hemisphere 0.7
2037 Male, age 80, right hemisphere 0.6
1818 Male, age 74, unknown 0.5
2287 Male, age 75, right hemisphere 0.4
2483 Female, age 94, right hemisphere 0.3
Nucleus accumbens
nTPM: 0.5
2732 Male, age 80, right hemisphere 1.0
2391 Female, age 94, left hemisphere 0.6
1806 Female, age 85, left hemisphere 0.5
2698 Female, age 72, unknown 0.5
1783 Male, age 74, unknown 0.4
2286 Male, age 75, left hemisphere 0.4
2824 Male, age 61, right hemisphere 0.4
1856 Female, age 91, right hemisphere 0.2
Nucleus basalis of Meynert
nTPM: 0.6
2569 Male, age 61, both hemispheres 1.2
2484 Female, age 94, left hemisphere 0.5
2393 Male, age 80, right hemisphere 0.4
2821 Male, age 75, both hemispheres 0.4
Nucleus of the diagonal band
nTPM: 0.5
1979 Male, age 74, unknown 0.8
2195 Female, age 85, both hemispheres 0.5
1812 Female, age 91, both hemispheres 0.4
2775 Male, age 80, right hemisphere 0.4
2029 Male, age 61, right hemisphere 0.2
Olfactory tubercle
nTPM: 0.4
2856 Male, age 75, right hemisphere 0.5
1846 Male, age 80, right hemisphere 0.4
1998 Female, age 91, both hemispheres 0.4
2487 Female, age 94, left hemisphere 0.3
Putamen
nTPM: 0.5
2647 Male, age 75, left hemisphere 0.8
2489 Female, age 72, unknown 0.7
1838 Male, age 80, right hemisphere 0.6
1829 Male, age 74, unknown 0.5
2466 Female, age 79, unknown 0.4
1937 Female, age 91, right hemisphere 0.3
2482 Female, age 94, left hemisphere 0.2
Septal nuclei
nTPM: 0.5
2059 Female, age 85, both hemispheres 0.8
2199 Male, age 80, right hemisphere 0.8
1960 Male, age 74, unknown 0.5
2009 Female, age 91, both hemispheres 0.4
2394 Male, age 61, left hemisphere 0.4
2629 Female, age 94, right hemisphere 0.4
2031 Female, age 72, unknown 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.5
Samples: 246

Max nTPM: 1.5
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 1.1
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.4
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 1.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 1.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 1.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 1.1
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 1.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 1.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 1.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 1.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 1.0
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 1.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 1.0
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Brain - Putamen (basal ganglia)
Average nTPM: 0.5
Samples: 205

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 1.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 1.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 1.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 1.0
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 1.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 0.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 0.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 0.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.8
FF:10164-103B2 76 years, female 3.8
Globus pallidus
Scaled Tags Per Million: 4.7
FF:10161-103A8 76 years, female 7.2
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 2.3
FF:10037-101F1 23-56 years, mixed 2.3
Putamen
Scaled Tags Per Million: 2.9
FF:10176-103C5 60 years, female 2.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.4
Pig sample Sample description nTPM
Caudate
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.5
Sample C Male 0.2
Sample D Male 0.7
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.2
Sample D Male 0.4
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.4
Sample D Male 0.2
Ventral pallidum
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.0
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.3
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69114860 Antisense, RP_050317_02_B10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
69114860 Antisense, RP_050317_02_B10, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.