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HSBP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:33.1 nTPM
FANTOM5:199.1 Scaled Tags Per Million
Pig:138.8 nTPM
Mouse:290.7 nTPM
Allen mouse:17.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
1870 Female, age 42, unknown 35.4
1827 Male, age 72, unknown 34.2
2828 Female, age 72, unknown 33.9
2411 Female, age 72, unknown 33.3
1833 Male, age 53, unknown 33.1
1830 Male, age 51, unknown 32.2
2219 Male, age 76, both hemispheres 32.1
2019 Male, age 18, unknown 31.9
2666 Male, age 74, left hemisphere 31.9
2586 Male, age 75, left hemisphere 30.4
Dorsal raphe nucleus
nTPM: 33.8
2298 Female, age 72, unknown 37.0
2750 Male, age 76, both hemispheres 33.9
1828 Male, age 53, unknown 32.9
2016 Female, age 72, unknown 32.8
2047 Male, age 72, unknown 32.4
Inferior colliculus
nTPM: 32.3
2097 Female, age 72, unknown 32.8
1848 Female, age 42, unknown 32.7
2849 Male, age 72, unknown 32.1
1890 Male, age 53, unknown 31.7
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Pedunculopontine tegmental nucleus
nTPM: 34.9
2338 Male, age 61, both hemispheres 35.3
2334 Male, age 80, both hemispheres 35.1
1921 Female, age 85, both hemispheres 34.4
Periaquaductal grey, anterior
nTPM: 33.6
1947 Male, age 18, unknown 34.8
1795 Male, age 51, unknown 33.9
2502 Female, age 75, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 33.3
2850 Male, age 76, both hemispheres 36.3
1831 Male, age 72, unknown 33.9
1840 Male, age 53, unknown 32.2
2464 Female, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 34.5
2272 Male, age 74, both hemispheres 36.2
2053 Male, age 18, unknown 34.0
2140 Male, age 76, both hemispheres 33.2
Pretectal area
nTPM: 34.5
2224 Female, age 72, unknown 36.1
2273 Male, age 74, both hemispheres 36.0
1815 Male, age 53, unknown 35.4
1816 Male, age 51, unknown 35.3
1817 Female, age 42, unknown 35.2
1944 Female, age 72, unknown 35.2
2007 Male, age 72, unknown 35.0
2667 Female, age 75, unknown 34.6
2407 Male, age 75, both hemispheres 33.0
2825 Male, age 18, unknown 33.0
2316 Male, age 76, right hemisphere 31.1
Red nucleus
nTPM: 33.7
2725 Female, age 75, unknown 35.8
1904 Male, age 53, unknown 35.6
1865 Male, age 51, unknown 35.2
1821 Female, age 72, unknown 34.8
2503 Female, age 72, unknown 34.7
1954 Female, age 42, unknown 33.6
2769 Male, age 72, unknown 33.6
2227 Male, age 72, unknown 33.5
2823 Male, age 76, right hemisphere 33.3
2785 Male, age 18, unknown 33.2
2588 Male, age 74, left hemisphere 30.6
2584 Male, age 75, left hemisphere 30.3
Substantia nigra
nTPM: 32.9
1889 Female, age 72, unknown 36.1
2409 Female, age 72, unknown 34.3
2699 Male, age 18, unknown 34.3
1916 Female, age 42, unknown 34.0
1851 Male, age 51, unknown 33.8
1941 Male, age 53, unknown 32.4
2590 Female, age 75, unknown 32.0
2241 Male, age 72, unknown 31.3
2665 Male, age 74, both hemispheres 30.4
2583 Male, age 75, right hemisphere 30.1
Superior colliculus
nTPM: 33.1
2587 Male, age 74, left hemisphere 35.3
1796 Male, age 53, unknown 34.4
1913 Female, age 42, unknown 34.4
1995 Male, age 72, unknown 33.6
2087 Female, age 72, unknown 33.5
2261 Male, age 18, unknown 33.4
2668 Female, age 75, unknown 33.2
1895 Male, age 76, right hemisphere 32.4
1839 Male, age 51, unknown 31.3
2664 Male, age 75, both hemispheres 29.9
Ventral tegmental area
nTPM: 34.2
2218 Male, age 76, both hemispheres 36.3
2410 Female, age 72, unknown 35.5
1915 Female, age 42, unknown 33.9
2223 Female, age 72, unknown 33.7
1942 Male, age 51, unknown 32.9
2021 Male, age 53, unknown 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.1
Samples: 139

Max nTPM: 70.2
Min nTPM: 13.8
Std nTPM: 8.4
Median nTPM: 32.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 63.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 59.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 50.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 50.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 45.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 44.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 199.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 199.1
FF:10158-103A5 76 years, female 199.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 138.8
Pig sample Sample description nTPM
Midbrain
nTPM: 138.9
Samples: 4

Max nTPM: 171.7
Min nTPM: 118.5
Sample A Female 171.7
Sample B Female 124.2
Sample C Male 141.0
Sample D Male 118.5
Periaqueductal gray
nTPM: 101.7
Samples: 3

Max nTPM: 114.5
Min nTPM: 90.2
Sample B Female 100.4
Sample C Male 114.5
Sample D Male 90.2
Substantia nigra
nTPM: 138.2
Samples: 4

Max nTPM: 186.3
Min nTPM: 104.7
Sample A Female 186.3
Sample B Female 104.7
Sample C Male 156.9
Sample D Male 104.9
Superior colliculi
nTPM: 129.6
Samples: 4

Max nTPM: 145.4
Min nTPM: 97.6
Sample A Female 145.4
Sample B Female 97.6
Sample C Male 138.0
Sample D Male 137.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 290.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 290.8
Samples: 4

Max nTPM: 299.3
Min nTPM: 282.6
Sample A Male 299.3
Sample B Male 283.5
Sample C Female 282.6
Sample D Female 297.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.5
72734 Antisense, RP_040407_01_B06, Mouse strain C57BL/6J (56 days, male) 18.9
74581381 Antisense, RP_051214_01_C06, Mouse strain C57BL/6J (56 days, male) 16.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.