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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA:5.6 nTPM
GTEx:22.2 nTPM
FANTOM5:64.7 Scaled Tags Per Million
Pig:1.8 nTPM
Mouse:73.7 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.3
2846 Female, age 79, unknown 5.7
2288 Male, age 75, left hemisphere 5.6
1854 Male, age 80, left hemisphere 5.5
2290 Female, age 72, unknown 5.5
1857 Female, age 85, left hemisphere 5.3
1781 Male, age 74, unknown 5.2
2289 Male, age 61, right hemisphere 4.8
2481 Female, age 94, left hemisphere 4.8
Claustrum
nTPM: 4.9
2392 Female, age 94, both hemispheres 5.4
2196 Female, age 79, unknown 5.2
1956 Male, age 74, unknown 5.1
2284 Female, age 91, both hemispheres 5.1
2568 Male, age 61, both hemispheres 4.9
2198 Male, age 80, both hemispheres 4.8
2292 Female, age 85, both hemispheres 4.7
2491 Male, age 75, both hemispheres 4.7
2645 Female, age 72, unknown 4.6
Globus pallidus, externus
nTPM: 4.4
2395 Male, age 75, both hemispheres 5.2
2567 Female, age 72, unknown 4.4
2772 Female, age 79, unknown 4.3
1996 Male, age 80, right hemisphere 4.1
2646 Male, age 61, right hemisphere 3.9
Globus pallidus, internus
nTPM: 4.7
2287 Male, age 75, right hemisphere 5.6
2778 Female, age 91, both hemispheres 4.8
2483 Female, age 94, right hemisphere 4.7
2566 Female, age 72, unknown 4.7
2111 Female, age 85, right hemisphere 4.6
2037 Male, age 80, right hemisphere 4.4
1818 Male, age 74, unknown 4.2
Nucleus accumbens
nTPM: 5.5
2824 Male, age 61, right hemisphere 6.4
1856 Female, age 91, right hemisphere 6.0
1806 Female, age 85, left hemisphere 5.6
1783 Male, age 74, unknown 5.5
2286 Male, age 75, left hemisphere 5.4
2391 Female, age 94, left hemisphere 5.4
2698 Female, age 72, unknown 5.2
2732 Male, age 80, right hemisphere 4.8
Nucleus basalis of Meynert
nTPM: 4.9
2393 Male, age 80, right hemisphere 5.5
2484 Female, age 94, left hemisphere 5.2
2821 Male, age 75, both hemispheres 5.0
2569 Male, age 61, both hemispheres 4.0
Nucleus of the diagonal band
nTPM: 5.6
2195 Female, age 85, both hemispheres 6.1
2775 Male, age 80, right hemisphere 5.8
1812 Female, age 91, both hemispheres 5.6
1979 Male, age 74, unknown 5.2
2029 Male, age 61, right hemisphere 5.2
Olfactory tubercle
nTPM: 5.5
1998 Female, age 91, both hemispheres 5.6
2487 Female, age 94, left hemisphere 5.6
1846 Male, age 80, right hemisphere 5.5
2856 Male, age 75, right hemisphere 5.2
Putamen
nTPM: 5.3
1838 Male, age 80, right hemisphere 6.0
2466 Female, age 79, unknown 5.9
1937 Female, age 91, right hemisphere 5.6
1829 Male, age 74, unknown 5.2
2482 Female, age 94, left hemisphere 5.1
2489 Female, age 72, unknown 4.8
2647 Male, age 75, left hemisphere 4.5
Septal nuclei
nTPM: 5.3
1960 Male, age 74, unknown 6.7
2031 Female, age 72, unknown 5.7
2009 Female, age 91, both hemispheres 5.3
2059 Female, age 85, both hemispheres 5.2
2629 Female, age 94, right hemisphere 5.2
2199 Male, age 80, right hemisphere 4.7
2394 Male, age 61, left hemisphere 4.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.0
Samples: 246

Max nTPM: 48.9
Min nTPM: 11.2
Std nTPM: 6.1
Median nTPM: 18.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 48.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 43.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 41.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 38.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 37.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 36.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 35.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 35.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 35.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 33.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.2
Samples: 246

Max nTPM: 48.6
Min nTPM: 10.5
Std nTPM: 5.6
Median nTPM: 21.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 48.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 37.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 37.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 35.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 35.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 35.0
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 34.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 34.2
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 33.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 33.2
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 32.8
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Brain - Putamen (basal ganglia)
Average nTPM: 20.6
Samples: 205

Max nTPM: 46.1
Min nTPM: 10.7
Std nTPM: 5.6
Median nTPM: 19.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 46.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 40.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 38.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 38.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 35.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 33.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 32.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 32.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 32.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 31.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 30.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.1
FF:10164-103B2 76 years, female 50.1
Globus pallidus
Scaled Tags Per Million: 45.8
FF:10175-103C4 60 years, female 58.4
FF:10161-103A8 76 years, female 33.2
Nucleus accumbens
Scaled Tags Per Million: 41.4
FF:10037-101F1 23-56 years, mixed 41.4
Putamen
Scaled Tags Per Million: 64.7
FF:10176-103C5 60 years, female 64.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.8
Pig sample Sample description nTPM
Caudate
nTPM: 1.1
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.5
Sample A Female 1.7
Sample B Female 0.5
Sample C Male 1.0
Sample D Male 1.0
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.8
Sample A Female 1.7
Sample B Female 1.1
Sample C Male 0.8
Sample D Male 0.8
Septum
nTPM: 1.8
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.4
Sample A Female 2.0
Sample B Female 1.7
Sample C Male 2.0
Sample D Male 1.4
Ventral pallidum
nTPM: 1.6
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.2
Sample A Female 1.8
Sample B Female 1.2
Sample C Male 1.4
Sample D Male 2.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 73.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 68.3
Samples: 4

Max nTPM: 69.3
Min nTPM: 67.3
Sample A Male 69.1
Sample B Male 67.3
Sample C Female 69.3
Sample D Female 67.4
Septum
nTPM: 72.5
Samples: 4

Max nTPM: 77.0
Min nTPM: 67.3
Sample A Male 69.9
Sample B Male 77.0
Sample C Female 75.7
Sample D Female 67.3
Ventral forebrain
nTPM: 73.7
Samples: 4

Max nTPM: 79.2
Min nTPM: 67.0
Sample A Male 79.2
Sample B Male 69.3
Sample C Female 79.2
Sample D Female 67.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70723589 Antisense, RP_050705_01_D07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70723589 Antisense, RP_050705_01_D07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.