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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.9 nTPM
HPA:64.9 nTPM
GTEx:73.5 nTPM
FANTOM5:51.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.2
2666 Male, age 74, left hemisphere 58.7
1830 Male, age 51, unknown 54.5
1870 Female, age 42, unknown 54.3
2828 Female, age 72, unknown 54.3
1833 Male, age 53, unknown 53.2
2586 Male, age 75, left hemisphere 52.1
2219 Male, age 76, both hemispheres 51.7
1827 Male, age 72, unknown 51.2
2019 Male, age 18, unknown 51.0
2411 Female, age 72, unknown 50.9
Dorsal raphe nucleus
nTPM: 53.2
1828 Male, age 53, unknown 55.4
2016 Female, age 72, unknown 55.4
2750 Male, age 76, both hemispheres 53.3
2047 Male, age 72, unknown 51.8
2298 Female, age 72, unknown 50.3
Inferior colliculus
nTPM: 52.2
2849 Male, age 72, unknown 55.9
1848 Female, age 42, unknown 52.2
1890 Male, age 53, unknown 51.2
2097 Female, age 72, unknown 49.3
Median raphe nucleus
nTPM: 53.4
2220 Male, age 76, midline 53.4
Pedunculopontine tegmental nucleus
nTPM: 64.9
2338 Male, age 61, both hemispheres 89.5
2334 Male, age 80, both hemispheres 56.8
1921 Female, age 85, both hemispheres 48.5
Periaquaductal grey, anterior
nTPM: 48.9
1795 Male, age 51, unknown 50.9
1947 Male, age 18, unknown 48.8
2502 Female, age 75, unknown 47.0
Periaquaductal grey, dorsal
nTPM: 53.9
2850 Male, age 76, both hemispheres 60.9
1831 Male, age 72, unknown 53.7
2464 Female, age 72, unknown 50.8
1840 Male, age 53, unknown 50.2
Periaquaductal grey, lateral
nTPM: 56.4
2140 Male, age 76, both hemispheres 58.2
2272 Male, age 74, both hemispheres 57.2
2053 Male, age 18, unknown 53.9
Pretectal area
nTPM: 53.5
2407 Male, age 75, both hemispheres 65.6
2316 Male, age 76, right hemisphere 61.7
2224 Female, age 72, unknown 54.4
2825 Male, age 18, unknown 53.3
1944 Female, age 72, unknown 53.2
1815 Male, age 53, unknown 52.9
2273 Male, age 74, both hemispheres 52.7
1817 Female, age 42, unknown 50.9
2007 Male, age 72, unknown 48.1
2667 Female, age 75, unknown 47.9
1816 Male, age 51, unknown 47.2
Red nucleus
nTPM: 53.8
1865 Male, age 51, unknown 57.0
2725 Female, age 75, unknown 57.0
2227 Male, age 72, unknown 56.3
2769 Male, age 72, unknown 56.3
1904 Male, age 53, unknown 55.2
2785 Male, age 18, unknown 53.9
2584 Male, age 75, left hemisphere 53.8
2823 Male, age 76, right hemisphere 53.7
2503 Female, age 72, unknown 52.6
1954 Female, age 42, unknown 51.9
1821 Female, age 72, unknown 51.8
2588 Male, age 74, left hemisphere 46.2
Substantia nigra
nTPM: 61.5
2590 Female, age 75, unknown 84.9
2699 Male, age 18, unknown 78.5
1851 Male, age 51, unknown 58.9
1916 Female, age 42, unknown 58.6
2583 Male, age 75, right hemisphere 58.2
2665 Male, age 74, both hemispheres 58.2
2409 Female, age 72, unknown 56.0
2241 Male, age 72, unknown 55.6
1941 Male, age 53, unknown 55.3
1889 Female, age 72, unknown 50.7
Superior colliculus
nTPM: 54.2
1913 Female, age 42, unknown 65.6
2587 Male, age 74, left hemisphere 62.2
1995 Male, age 72, unknown 56.3
2664 Male, age 75, both hemispheres 55.5
1839 Male, age 51, unknown 54.3
1796 Male, age 53, unknown 51.7
1895 Male, age 76, right hemisphere 50.9
2668 Female, age 75, unknown 48.9
2087 Female, age 72, unknown 48.6
2261 Male, age 18, unknown 48.4
Ventral tegmental area
nTPM: 55.9
2021 Male, age 53, unknown 62.4
1915 Female, age 42, unknown 57.0
2218 Male, age 76, both hemispheres 55.6
1942 Male, age 51, unknown 54.7
2223 Female, age 72, unknown 54.3
2410 Female, age 72, unknown 51.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.5
Samples: 139

Max nTPM: 347.5
Min nTPM: 7.6
Std nTPM: 59.7
Median nTPM: 57.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 347.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 290.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 288.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 282.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 260.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 216.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 205.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 199.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 184.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 152.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 146.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.3
FF:10158-103A5 76 years, female 51.3

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