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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:13.0 nTPM
FANTOM5:61.3 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.3
2846 Female, age 79, unknown 42.6
1857 Female, age 85, left hemisphere 38.9
2290 Female, age 72, unknown 37.6
1854 Male, age 80, left hemisphere 33.8
2289 Male, age 61, right hemisphere 32.8
2288 Male, age 75, left hemisphere 31.8
2481 Female, age 94, left hemisphere 20.7
1781 Male, age 74, unknown 20.0
Claustrum
nTPM: 9.0
2198 Male, age 80, both hemispheres 14.1
2568 Male, age 61, both hemispheres 13.7
2284 Female, age 91, both hemispheres 13.3
2392 Female, age 94, both hemispheres 10.4
2491 Male, age 75, both hemispheres 9.3
2645 Female, age 72, unknown 5.9
1956 Male, age 74, unknown 4.9
2196 Female, age 79, unknown 4.5
2292 Female, age 85, both hemispheres 4.5
Globus pallidus, externus
nTPM: 2.5
2395 Male, age 75, both hemispheres 4.7
2646 Male, age 61, right hemisphere 3.8
2772 Female, age 79, unknown 3.2
2567 Female, age 72, unknown 0.7
1996 Male, age 80, right hemisphere 0.0
Globus pallidus, internus
nTPM: 1.5
2483 Female, age 94, right hemisphere 10.2
1818 Male, age 74, unknown 0.6
2287 Male, age 75, right hemisphere 0.2
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 17.5
1806 Female, age 85, left hemisphere 25.8
2286 Male, age 75, left hemisphere 25.8
1856 Female, age 91, right hemisphere 22.9
1783 Male, age 74, unknown 22.3
2824 Male, age 61, right hemisphere 19.1
2391 Female, age 94, left hemisphere 13.7
2698 Female, age 72, unknown 8.3
2732 Male, age 80, right hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 27.0
2393 Male, age 80, right hemisphere 40.6
2484 Female, age 94, left hemisphere 40.6
2821 Male, age 75, both hemispheres 22.0
2569 Male, age 61, both hemispheres 4.8
Nucleus of the diagonal band
nTPM: 5.1
2029 Male, age 61, right hemisphere 7.2
1812 Female, age 91, both hemispheres 6.3
1979 Male, age 74, unknown 5.6
2775 Male, age 80, right hemisphere 3.6
2195 Female, age 85, both hemispheres 2.8
Olfactory tubercle
nTPM: 6.0
1998 Female, age 91, both hemispheres 8.8
2856 Male, age 75, right hemisphere 8.1
2487 Female, age 94, left hemisphere 4.5
1846 Male, age 80, right hemisphere 2.8
Putamen
nTPM: 42.5
2466 Female, age 79, unknown 51.2
2489 Female, age 72, unknown 49.9
1829 Male, age 74, unknown 48.3
1838 Male, age 80, right hemisphere 46.7
2647 Male, age 75, left hemisphere 42.7
1937 Female, age 91, right hemisphere 37.1
2482 Female, age 94, left hemisphere 21.8
Septal nuclei
nTPM: 3.8
2629 Female, age 94, right hemisphere 5.8
2031 Female, age 72, unknown 5.4
2009 Female, age 91, both hemispheres 5.2
2199 Male, age 80, right hemisphere 4.2
2394 Male, age 61, left hemisphere 3.9
1960 Male, age 74, unknown 1.0
2059 Female, age 85, both hemispheres 0.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.0
Samples: 246

Max nTPM: 59.3
Min nTPM: 0.2
Std nTPM: 11.9
Median nTPM: 8.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 59.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 55.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 53.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 50.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 49.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 49.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 48.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 45.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 43.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 42.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 42.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.1
Samples: 246

Max nTPM: 54.9
Min nTPM: 0.0
Std nTPM: 8.3
Median nTPM: 6.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 54.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 34.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 33.6
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 31.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 29.3
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 29.2
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 28.3
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 28.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 27.5
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 27.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 25.9
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Brain - Putamen (basal ganglia)
Average nTPM: 12.6
Samples: 205

Max nTPM: 73.1
Min nTPM: 0.0
Std nTPM: 11.4
Median nTPM: 8.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 73.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 63.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 46.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 39.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 37.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 37.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 37.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 37.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 36.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 35.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 34.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.5
FF:10164-103B2 76 years, female 37.5
Globus pallidus
Scaled Tags Per Million: 33.9
FF:10175-103C4 60 years, female 54.4
FF:10161-103A8 76 years, female 13.3
Nucleus accumbens
Scaled Tags Per Million: 61.3
FF:10037-101F1 23-56 years, mixed 61.3
Putamen
Scaled Tags Per Million: 30.3
FF:10176-103C5 60 years, female 30.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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