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ATXN7L3B
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA:28.2 nTPM
GTEx:24.0 nTPM
FANTOM5:140.6 Scaled Tags Per Million
Mouse:134.2 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.4
2288 Male, age 75, left hemisphere 26.0
2481 Female, age 94, left hemisphere 25.4
1781 Male, age 74, unknown 24.7
2846 Female, age 79, unknown 24.6
2290 Female, age 72, unknown 23.1
1857 Female, age 85, left hemisphere 22.5
1854 Male, age 80, left hemisphere 21.3
2289 Male, age 61, right hemisphere 19.4
Claustrum
nTPM: 24.8
2392 Female, age 94, both hemispheres 27.3
2198 Male, age 80, both hemispheres 26.2
1956 Male, age 74, unknown 25.7
2284 Female, age 91, both hemispheres 25.3
2491 Male, age 75, both hemispheres 25.0
2568 Male, age 61, both hemispheres 24.7
2196 Female, age 79, unknown 24.4
2645 Female, age 72, unknown 22.7
2292 Female, age 85, both hemispheres 21.5
Globus pallidus, externus
nTPM: 22.2
2395 Male, age 75, both hemispheres 25.8
2772 Female, age 79, unknown 24.1
1996 Male, age 80, right hemisphere 21.8
2567 Female, age 72, unknown 19.6
2646 Male, age 61, right hemisphere 19.5
Globus pallidus, internus
nTPM: 22.7
2287 Male, age 75, right hemisphere 28.8
2483 Female, age 94, right hemisphere 26.0
2778 Female, age 91, both hemispheres 23.2
1818 Male, age 74, unknown 22.6
2566 Female, age 72, unknown 20.4
2037 Male, age 80, right hemisphere 19.8
2111 Female, age 85, right hemisphere 18.4
Nucleus accumbens
nTPM: 24.6
2286 Male, age 75, left hemisphere 26.5
2391 Female, age 94, left hemisphere 25.9
1856 Female, age 91, right hemisphere 25.8
2824 Male, age 61, right hemisphere 25.6
1783 Male, age 74, unknown 24.7
1806 Female, age 85, left hemisphere 22.9
2698 Female, age 72, unknown 22.9
2732 Male, age 80, right hemisphere 22.2
Nucleus basalis of Meynert
nTPM: 21.5
2484 Female, age 94, left hemisphere 22.6
2393 Male, age 80, right hemisphere 21.9
2821 Male, age 75, both hemispheres 21.6
2569 Male, age 61, both hemispheres 20.0
Nucleus of the diagonal band
nTPM: 28.2
2775 Male, age 80, right hemisphere 30.5
2029 Male, age 61, right hemisphere 30.1
1812 Female, age 91, both hemispheres 29.8
1979 Male, age 74, unknown 25.8
2195 Female, age 85, both hemispheres 24.9
Olfactory tubercle
nTPM: 27.2
1998 Female, age 91, both hemispheres 29.9
1846 Male, age 80, right hemisphere 28.7
2487 Female, age 94, left hemisphere 26.1
2856 Male, age 75, right hemisphere 24.0
Putamen
nTPM: 22.9
2466 Female, age 79, unknown 25.1
2482 Female, age 94, left hemisphere 24.5
1937 Female, age 91, right hemisphere 23.9
1838 Male, age 80, right hemisphere 23.1
1829 Male, age 74, unknown 22.9
2647 Male, age 75, left hemisphere 22.0
2489 Female, age 72, unknown 18.4
Septal nuclei
nTPM: 25.9
2031 Female, age 72, unknown 32.1
2009 Female, age 91, both hemispheres 27.8
1960 Male, age 74, unknown 27.4
2629 Female, age 94, right hemisphere 27.0
2394 Male, age 61, left hemisphere 23.6
2059 Female, age 85, both hemispheres 21.8
2199 Male, age 80, right hemisphere 21.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.1
Samples: 246

Max nTPM: 44.6
Min nTPM: 14.6
Std nTPM: 3.8
Median nTPM: 22.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 44.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 37.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 35.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 31.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 31.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 31.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 31.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 31.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 30.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 35.6
Min nTPM: 14.1
Std nTPM: 4.8
Median nTPM: 23.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 35.6
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 35.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 34.3
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 33.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 33.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 33.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 32.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 32.3
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 32.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 32.1
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 32.1
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Brain - Putamen (basal ganglia)
Average nTPM: 22.1
Samples: 205

Max nTPM: 31.4
Min nTPM: 13.4
Std nTPM: 3.3
Median nTPM: 21.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 31.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 30.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 30.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 29.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 28.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 28.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 28.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 28.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 28.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 28.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 28.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 106.1
FF:10164-103B2 76 years, female 106.1
Globus pallidus
Scaled Tags Per Million: 80.8
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 76.4
Nucleus accumbens
Scaled Tags Per Million: 140.6
FF:10037-101F1 23-56 years, mixed 140.6
Putamen
Scaled Tags Per Million: 110.7
FF:10176-103C5 60 years, female 110.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 134.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 134.3
Samples: 4

Max nTPM: 143.1
Min nTPM: 123.5
Sample A Male 132.5
Sample B Male 123.5
Sample C Female 137.9
Sample D Female 143.1
Septum
nTPM: 128.1
Samples: 4

Max nTPM: 136.0
Min nTPM: 119.7
Sample A Male 119.7
Sample B Male 136.0
Sample C Female 130.7
Sample D Female 125.9
Ventral forebrain
nTPM: 130.9
Samples: 4

Max nTPM: 139.2
Min nTPM: 120.9
Sample A Male 120.9
Sample B Male 132.8
Sample C Female 139.2
Sample D Female 130.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.