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PCDHGA11
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:2.1 nTPM
HPA:2.1 nTPM
GTEx:1.0 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Mouse:14.4 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008755
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 2.1
Sample id Sample description nTPM
Hippocampus
nTPM: 2.1
2529 Female, age 94, left hemisphere 3.6
2148 Female, age 91, left hemisphere 2.9
1911 Female, age 85, right hemisphere 2.8
2621 Female, age 67, right hemisphere 1.7
1898 Male, age 80, left hemisphere 1.2
1855 Male, age 76, left hemisphere 0.1
Dentate gyrus
nTPM: 1.4
2528 Male, age 74, both hemispheres 2.7
2531 Female, age 67, both hemispheres 1.7
2246 Female, age 85, both hemispheres 1.4
1927 Female, age 91, both hemispheres 1.3
2530 Female, age 94, left hemisphere 1.2
2010 Male, age 76, both hemispheres 0.0
Entorhinal gyrus
nTPM: 1.1
2117 Female, age 91, right hemisphere 2.6
2686 Male, age 75, right hemisphere 1.3
1938 Female, age 85, left hemisphere 0.9
2613 Female, age 94, left hemisphere 0.7
2764 Male, age 80, right hemisphere 0.6
1787 Male, age 76, left hemisphere 0.1
Hippocampus, CA1
nTPM: 1.4
2082 Female, age 91, right hemisphere 2.3
1873 Female, age 85, both hemispheres 2.2
2527 Male, age 74, both hemispheres 1.8
2045 Male, age 76, both hemispheres 1.0
2749 Male, age 80, left hemisphere 0.0
Hippocampus, CA2
nTPM: 1.5
2113 Female, age 91, right hemisphere 3.3
2249 Male, age 74, both hemispheres 2.3
2437 Female, age 94, left hemisphere 1.4
1940 Female, age 85, left hemisphere 1.2
1963 Male, age 80, left hemisphere 1.0
1892 Male, age 76, both hemispheres 0.0
Hippocampus, CA3
nTPM: 1.7
2620 Female, age 94, left hemisphere 3.6
1891 Female, age 85, both hemispheres 2.9
2436 Male, age 74, both hemispheres 1.9
2861 Female, age 67, both hemispheres 1.6
2137 Male, age 80, left hemisphere 0.3
1867 Male, age 76, both hemispheres 0.0
Parahippocampal cortex
nTPM: 1.0
2692 Male, age 74, both hemispheres 2.6
2250 Female, age 67, right hemisphere 1.3
2245 Female, age 91, both hemispheres 1.2
2622 Female, age 67, right hemisphere 1.1
1990 Female, age 91, right hemisphere 1.0
1933 Female, age 85, both hemispheres 0.8
2693 Female, age 94, both hemispheres 0.8
2532 Female, age 72, left hemisphere 0.6
1850 Male, age 80, both hemispheres 0.5
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 0.2
1847 Female, age 91, left hemisphere 0.5
2848 Male, age 76, right hemisphere 0.5
2521 Female, age 94, right hemisphere 0.1
1794 Male, age 80, right hemisphere 0.0
1841 Female, age 85, right hemisphere 0.0
Subiculum
nTPM: 1.8
2729 Female, age 91, right hemisphere 3.6
2619 Male, age 74, both hemispheres 2.0
2438 Female, age 94, left hemisphere 1.5
1977 Female, age 85, both hemispheres 1.4
1901 Male, age 80, both hemispheres 1.3
2042 Male, age 76, both hemispheres 1.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 1.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1.0
Samples: 197

Max nTPM: 3.9
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 3.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 3.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 3.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 3.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 2.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 2.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 2.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 2.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 2.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 2.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 2.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.4
FF:10153-102I9 76 years, female 14.7
FF:10169-103B7 60 years, female 4.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.0
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.0
Sample A Male 13.0
Sample B Male 13.0
Sample C Female 14.3
Sample D Female 15.5
Hippocampal formation
nTPM: 14.4
Samples: 4

Max nTPM: 17.1
Min nTPM: 11.4
Sample A Male 11.4
Sample B Male 16.0
Sample C Female 17.1
Sample D Female 12.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 19.6
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 11.6
79354776 Antisense, RP_070813_03_A03, Mouse strain C57BL/6J (56 days, male) 1.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.