ABOUTMENU
HELP
NEWS
AL136295.1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:0.7 nTPM
HPA:0.7 nTPM
GTEx:1.6 nTPM
FANTOM5:66.3 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA059249
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.6
2481 Female, age 94, left hemisphere 0.8
1781 Male, age 74, unknown 0.7
1854 Male, age 80, left hemisphere 0.7
2846 Female, age 79, unknown 0.7
2290 Female, age 72, unknown 0.6
1857 Female, age 85, left hemisphere 0.5
2289 Male, age 61, right hemisphere 0.5
2288 Male, age 75, left hemisphere 0.4
Claustrum
nTPM: 0.7
2568 Male, age 61, both hemispheres 0.8
2196 Female, age 79, unknown 0.7
2198 Male, age 80, both hemispheres 0.7
2292 Female, age 85, both hemispheres 0.7
2645 Female, age 72, unknown 0.7
2284 Female, age 91, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.5
1956 Male, age 74, unknown 0.4
Globus pallidus, externus
nTPM: 0.6
2646 Male, age 61, right hemisphere 0.8
2395 Male, age 75, both hemispheres 0.7
2567 Female, age 72, unknown 0.6
1996 Male, age 80, right hemisphere 0.5
2772 Female, age 79, unknown 0.4
Globus pallidus, internus
nTPM: 0.5
1818 Male, age 74, unknown 0.6
2111 Female, age 85, right hemisphere 0.6
2566 Female, age 72, unknown 0.5
2778 Female, age 91, both hemispheres 0.5
2287 Male, age 75, right hemisphere 0.4
2483 Female, age 94, right hemisphere 0.4
2037 Male, age 80, right hemisphere 0.2
Nucleus accumbens
nTPM: 0.5
2698 Female, age 72, unknown 0.8
2391 Female, age 94, left hemisphere 0.7
1783 Male, age 74, unknown 0.5
1806 Female, age 85, left hemisphere 0.5
2732 Male, age 80, right hemisphere 0.5
1856 Female, age 91, right hemisphere 0.4
2286 Male, age 75, left hemisphere 0.4
2824 Male, age 61, right hemisphere 0.4
Nucleus basalis of Meynert
nTPM: 0.7
2821 Male, age 75, both hemispheres 1.0
2393 Male, age 80, right hemisphere 0.6
2484 Female, age 94, left hemisphere 0.5
2569 Male, age 61, both hemispheres 0.5
Nucleus of the diagonal band
nTPM: 0.5
1812 Female, age 91, both hemispheres 0.5
1979 Male, age 74, unknown 0.5
2029 Male, age 61, right hemisphere 0.5
2195 Female, age 85, both hemispheres 0.4
2775 Male, age 80, right hemisphere 0.4
Olfactory tubercle
nTPM: 0.4
2856 Male, age 75, right hemisphere 0.6
1846 Male, age 80, right hemisphere 0.4
1998 Female, age 91, both hemispheres 0.4
2487 Female, age 94, left hemisphere 0.4
Putamen
nTPM: 0.6
2647 Male, age 75, left hemisphere 0.8
2482 Female, age 94, left hemisphere 0.6
2489 Female, age 72, unknown 0.6
1829 Male, age 74, unknown 0.5
1838 Male, age 80, right hemisphere 0.5
2466 Female, age 79, unknown 0.5
1937 Female, age 91, right hemisphere 0.4
Septal nuclei
nTPM: 0.5
2059 Female, age 85, both hemispheres 0.7
2199 Male, age 80, right hemisphere 0.7
1960 Male, age 74, unknown 0.5
2629 Female, age 94, right hemisphere 0.5
2009 Female, age 91, both hemispheres 0.4
2031 Female, age 72, unknown 0.4
2394 Male, age 61, left hemisphere 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.6
Samples: 246

Max nTPM: 7.6
Min nTPM: 0.0
Std nTPM: 1.7
Median nTPM: 1.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 7.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 7.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 7.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 7.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 6.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 6.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 6.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 6.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 5.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 5.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 5.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.4
Samples: 246

Max nTPM: 12.3
Min nTPM: 0.0
Std nTPM: 1.7
Median nTPM: 0.8
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 12.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 8.7
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 7.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 6.8
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 6.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 5.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 5.5
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 5.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 5.0
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 4.9
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 4.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 1.6
Samples: 205

Max nTPM: 9.0
Min nTPM: 0.0
Std nTPM: 1.8
Median nTPM: 1.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 9.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 8.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 7.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 6.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 6.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 5.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 5.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 5.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 5.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 5.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 5.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.3
FF:10164-103B2 76 years, female 66.3
Globus pallidus
Scaled Tags Per Million: 64.1
FF:10161-103A8 76 years, female 71.3
FF:10175-103C4 60 years, female 56.8
Nucleus accumbens
Scaled Tags Per Million: 36.6
FF:10037-101F1 23-56 years, mixed 36.6
Putamen
Scaled Tags Per Million: 64.5
FF:10176-103C5 60 years, female 64.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.