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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:616.4 nTPM
HPA:616.4 nTPM
GTEx:547.6 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:99.9 nTPM
Mouse:296.3 nTPM
Allen mouse:17.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040688Antibody HPA055316
Glial cells Not detectedNot detected
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 616.4
Sample id Sample description nTPM
Hippocampus
nTPM: 616.4
1898 Male, age 80, left hemisphere 638.2
2529 Female, age 94, left hemisphere 622.5
2621 Female, age 67, right hemisphere 614.6
2148 Female, age 91, left hemisphere 614.4
1855 Male, age 76, left hemisphere 608.4
1911 Female, age 85, right hemisphere 599.9
Dentate gyrus
nTPM: 609.0
2530 Female, age 94, left hemisphere 628.4
2010 Male, age 76, both hemispheres 616.6
2528 Male, age 74, both hemispheres 607.6
2531 Female, age 67, both hemispheres 603.5
2246 Female, age 85, both hemispheres 602.7
1927 Female, age 91, both hemispheres 595.4
Entorhinal gyrus
nTPM: 609.6
2686 Male, age 75, right hemisphere 648.2
2117 Female, age 91, right hemisphere 625.9
1787 Male, age 76, left hemisphere 599.8
2764 Male, age 80, right hemisphere 597.3
1938 Female, age 85, left hemisphere 597.2
2613 Female, age 94, left hemisphere 589.5
Hippocampus, CA1
nTPM: 606.6
2045 Male, age 76, both hemispheres 614.3
1873 Female, age 85, both hemispheres 611.6
2082 Female, age 91, right hemisphere 608.8
2527 Male, age 74, both hemispheres 605.5
2749 Male, age 80, left hemisphere 593.0
Hippocampus, CA2
nTPM: 609.3
1963 Male, age 80, left hemisphere 633.2
1892 Male, age 76, both hemispheres 612.6
2113 Female, age 91, right hemisphere 611.3
2437 Female, age 94, left hemisphere 604.2
2249 Male, age 74, both hemispheres 598.1
1940 Female, age 85, left hemisphere 596.3
Hippocampus, CA3
nTPM: 603.3
2861 Female, age 67, both hemispheres 617.9
1867 Male, age 76, both hemispheres 614.2
1891 Female, age 85, both hemispheres 608.7
2436 Male, age 74, both hemispheres 606.3
2620 Female, age 94, left hemisphere 588.4
2137 Male, age 80, left hemisphere 584.4
Parahippocampal cortex
nTPM: 594.4
2018 Male, age 76, both hemispheres 620.9
2692 Male, age 74, both hemispheres 599.5
1990 Female, age 91, right hemisphere 599.4
1850 Male, age 80, both hemispheres 598.7
2245 Female, age 91, both hemispheres 595.4
2250 Female, age 67, right hemisphere 593.3
1933 Female, age 85, both hemispheres 591.5
2622 Female, age 67, right hemisphere 590.8
2532 Female, age 72, left hemisphere 581.4
2693 Female, age 94, both hemispheres 573.5
Perirhinal gyrus
nTPM: 598.6
1847 Female, age 91, left hemisphere 620.8
1841 Female, age 85, right hemisphere 597.1
1794 Male, age 80, right hemisphere 594.2
2521 Female, age 94, right hemisphere 592.3
2848 Male, age 76, right hemisphere 588.5
Subiculum
nTPM: 603.3
2042 Male, age 76, both hemispheres 615.4
2729 Female, age 91, right hemisphere 609.6
1977 Female, age 85, both hemispheres 607.3
2619 Male, age 74, both hemispheres 607.0
1901 Male, age 80, both hemispheres 598.7
2438 Female, age 94, left hemisphere 582.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 547.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 547.6
Samples: 197

Max nTPM: 1063.0
Min nTPM: 319.3
Std nTPM: 130.1
Median nTPM: 518.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1063.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 1037.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 954.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 905.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 884.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 865.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 855.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 852.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 823.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 795.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 786.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.9
FF:10169-103B7 60 years, female 31.3
FF:10153-102I9 76 years, female 18.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 99.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 99.9
Samples: 4

Max nTPM: 129.4
Min nTPM: 70.7
Sample A Female 129.4
Sample B Female 87.9
Sample C Male 111.5
Sample D Male 70.7
Entorhinal cortex
nTPM: 91.5
Samples: 4

Max nTPM: 111.3
Min nTPM: 68.2
Sample A Female 86.6
Sample B Female 111.3
Sample C Male 99.9
Sample D Male 68.2
Subiculum
nTPM: 95.5
Samples: 4

Max nTPM: 133.2
Min nTPM: 76.7
Sample A Female 133.2
Sample B Female 89.4
Sample C Male 82.6
Sample D Male 76.7
Ventral hippocampus
nTPM: 95.3
Samples: 4

Max nTPM: 127.5
Min nTPM: 79.4
Sample A Female 94.1
Sample B Female 80.0
Sample C Male 127.5
Sample D Male 79.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 296.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 294.4
Samples: 4

Max nTPM: 311.9
Min nTPM: 285.1
Sample A Male 291.3
Sample B Male 285.1
Sample C Female 311.9
Sample D Female 289.1
Hippocampal formation
nTPM: 296.3
Samples: 4

Max nTPM: 321.9
Min nTPM: 274.6
Sample A Male 321.9
Sample B Male 288.2
Sample C Female 274.6
Sample D Female 300.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.5
74819238 Antisense, RP_060315_02_C02, Mouse strain C57BL/6J (56 days, male) 19.6
68441520 Antisense, RP_041214_02_E05, Mouse strain C57BL/6J (56 days, male) 15.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.