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CKLF-CMTM1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:1.6 nTPM
HPA:1.6 nTPM
GTEx:2.4 nTPM
FANTOM5:36.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA017136
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.9
1781 Male, age 74, unknown 1.3
1854 Male, age 80, left hemisphere 1.2
1857 Female, age 85, left hemisphere 1.1
2846 Female, age 79, unknown 1.1
2289 Male, age 61, right hemisphere 0.8
2290 Female, age 72, unknown 0.7
2288 Male, age 75, left hemisphere 0.5
2481 Female, age 94, left hemisphere 0.3
Claustrum
nTPM: 1.4
2284 Female, age 91, both hemispheres 1.9
2196 Female, age 79, unknown 1.6
2645 Female, age 72, unknown 1.6
2568 Male, age 61, both hemispheres 1.4
2198 Male, age 80, both hemispheres 1.3
2292 Female, age 85, both hemispheres 1.3
2392 Female, age 94, both hemispheres 1.2
2491 Male, age 75, both hemispheres 1.2
1956 Male, age 74, unknown 1.1
Globus pallidus, externus
nTPM: 0.9
2395 Male, age 75, both hemispheres 1.5
2567 Female, age 72, unknown 1.2
2772 Female, age 79, unknown 0.7
2646 Male, age 61, right hemisphere 0.6
1996 Male, age 80, right hemisphere 0.5
Globus pallidus, internus
nTPM: 1.0
2037 Male, age 80, right hemisphere 1.5
2566 Female, age 72, unknown 1.5
1818 Male, age 74, unknown 1.2
2778 Female, age 91, both hemispheres 1.1
2111 Female, age 85, right hemisphere 0.8
2483 Female, age 94, right hemisphere 0.8
2287 Male, age 75, right hemisphere 0.4
Nucleus accumbens
nTPM: 0.9
2286 Male, age 75, left hemisphere 1.3
1856 Female, age 91, right hemisphere 1.2
2732 Male, age 80, right hemisphere 1.1
1783 Male, age 74, unknown 1.0
2698 Female, age 72, unknown 0.8
2824 Male, age 61, right hemisphere 0.8
1806 Female, age 85, left hemisphere 0.4
2391 Female, age 94, left hemisphere 0.3
Nucleus basalis of Meynert
nTPM: 0.9
2393 Male, age 80, right hemisphere 1.0
2569 Male, age 61, both hemispheres 0.9
2821 Male, age 75, both hemispheres 0.9
2484 Female, age 94, left hemisphere 0.7
Nucleus of the diagonal band
nTPM: 1.6
2029 Male, age 61, right hemisphere 2.3
1812 Female, age 91, both hemispheres 1.6
1979 Male, age 74, unknown 1.5
2775 Male, age 80, right hemisphere 1.4
2195 Female, age 85, both hemispheres 1.3
Olfactory tubercle
nTPM: 1.5
1846 Male, age 80, right hemisphere 1.9
1998 Female, age 91, both hemispheres 1.9
2487 Female, age 94, left hemisphere 1.1
2856 Male, age 75, right hemisphere 1.0
Putamen
nTPM: 1.0
2647 Male, age 75, left hemisphere 1.4
1838 Male, age 80, right hemisphere 1.1
2466 Female, age 79, unknown 1.1
2482 Female, age 94, left hemisphere 1.1
1937 Female, age 91, right hemisphere 0.9
1829 Male, age 74, unknown 0.8
2489 Female, age 72, unknown 0.6
Septal nuclei
nTPM: 1.0
2031 Female, age 72, unknown 1.5
1960 Male, age 74, unknown 1.2
2009 Female, age 91, both hemispheres 1.2
2199 Male, age 80, right hemisphere 1.1
2059 Female, age 85, both hemispheres 0.9
2629 Female, age 94, right hemisphere 0.9
2394 Male, age 61, left hemisphere 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.0
Samples: 246

Max nTPM: 5.4
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 1.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 5.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 5.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 4.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 4.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 4.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 4.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 4.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 4.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 3.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 3.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 3.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.4
Samples: 246

Max nTPM: 6.2
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 2.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 6.2
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 5.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 5.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 5.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 4.8
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 4.8
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 4.8
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 4.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 4.2
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 4.1
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 4.1
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Brain - Putamen (basal ganglia)
Average nTPM: 2.0
Samples: 205

Max nTPM: 5.1
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 2.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 5.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 4.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 4.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 4.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 4.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 3.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 3.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 3.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 3.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.8
FF:10164-103B2 76 years, female 30.8
Globus pallidus
Scaled Tags Per Million: 36.2
FF:10175-103C4 60 years, female 37.1
FF:10161-103A8 76 years, female 35.4
Nucleus accumbens
Scaled Tags Per Million: 16.4
FF:10037-101F1 23-56 years, mixed 16.4
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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