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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:101.7 nTPM
HPA:101.7 nTPM
GTEx:143.8 nTPM
FANTOM5:470.9 Scaled Tags Per Million
Mouse:238.6 nTPM
Allen mouse:13.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 101.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.3
1870 Female, age 42, unknown 101.8
1827 Male, age 72, unknown 93.4
1833 Male, age 53, unknown 90.3
1830 Male, age 51, unknown 89.9
2411 Female, age 72, unknown 89.7
2019 Male, age 18, unknown 87.6
2219 Male, age 76, both hemispheres 87.5
2586 Male, age 75, left hemisphere 86.1
2666 Male, age 74, left hemisphere 85.9
2828 Female, age 72, unknown 81.1
Dorsal raphe nucleus
nTPM: 91.0
2750 Male, age 76, both hemispheres 96.1
2298 Female, age 72, unknown 90.9
2047 Male, age 72, unknown 90.3
2016 Female, age 72, unknown 89.5
1828 Male, age 53, unknown 88.2
Inferior colliculus
nTPM: 93.9
1848 Female, age 42, unknown 96.0
2097 Female, age 72, unknown 95.1
2849 Male, age 72, unknown 93.0
1890 Male, age 53, unknown 91.5
Median raphe nucleus
nTPM: 101.7
2220 Male, age 76, midline 101.7
Pedunculopontine tegmental nucleus
nTPM: 99.8
2334 Male, age 80, both hemispheres 100.6
1921 Female, age 85, both hemispheres 99.4
2338 Male, age 61, both hemispheres 99.2
Periaquaductal grey, anterior
nTPM: 91.3
1947 Male, age 18, unknown 96.7
2502 Female, age 75, unknown 89.3
1795 Male, age 51, unknown 87.8
Periaquaductal grey, dorsal
nTPM: 90.7
2850 Male, age 76, both hemispheres 94.6
1840 Male, age 53, unknown 93.5
1831 Male, age 72, unknown 90.3
2464 Female, age 72, unknown 84.4
Periaquaductal grey, lateral
nTPM: 86.8
2053 Male, age 18, unknown 91.0
2140 Male, age 76, both hemispheres 86.4
2272 Male, age 74, both hemispheres 83.0
Pretectal area
nTPM: 94.3
2667 Female, age 75, unknown 102.1
1944 Female, age 72, unknown 97.4
1816 Male, age 51, unknown 97.3
2407 Male, age 75, both hemispheres 96.4
1817 Female, age 42, unknown 96.1
2007 Male, age 72, unknown 93.9
1815 Male, age 53, unknown 93.7
2224 Female, age 72, unknown 93.3
2825 Male, age 18, unknown 90.6
2316 Male, age 76, right hemisphere 90.4
2273 Male, age 74, both hemispheres 85.9
Red nucleus
nTPM: 91.7
1821 Female, age 72, unknown 101.7
2725 Female, age 75, unknown 101.3
1954 Female, age 42, unknown 92.8
2584 Male, age 75, left hemisphere 91.1
1865 Male, age 51, unknown 91.0
1904 Male, age 53, unknown 91.0
2823 Male, age 76, right hemisphere 90.4
2227 Male, age 72, unknown 89.3
2503 Female, age 72, unknown 89.3
2769 Male, age 72, unknown 88.9
2785 Male, age 18, unknown 87.6
2588 Male, age 74, left hemisphere 86.1
Substantia nigra
nTPM: 90.7
1889 Female, age 72, unknown 99.2
2241 Male, age 72, unknown 96.7
1941 Male, age 53, unknown 92.4
2409 Female, age 72, unknown 92.0
1916 Female, age 42, unknown 91.2
2665 Male, age 74, both hemispheres 89.9
1851 Male, age 51, unknown 89.7
2699 Male, age 18, unknown 89.1
2583 Male, age 75, right hemisphere 84.1
2590 Female, age 75, unknown 83.0
Superior colliculus
nTPM: 90.6
1895 Male, age 76, right hemisphere 99.8
1913 Female, age 42, unknown 92.5
1839 Male, age 51, unknown 92.4
1796 Male, age 53, unknown 92.2
2087 Female, age 72, unknown 91.3
2261 Male, age 18, unknown 90.8
2587 Male, age 74, left hemisphere 88.8
1995 Male, age 72, unknown 86.9
2664 Male, age 75, both hemispheres 85.8
2668 Female, age 75, unknown 85.7
Ventral tegmental area
nTPM: 90.2
2223 Female, age 72, unknown 94.5
1915 Female, age 42, unknown 92.9
2218 Male, age 76, both hemispheres 91.8
1942 Male, age 51, unknown 88.9
2021 Male, age 53, unknown 88.0
2410 Female, age 72, unknown 85.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 143.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 143.8
Samples: 139

Max nTPM: 235.3
Min nTPM: 78.7
Std nTPM: 27.2
Median nTPM: 143.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 235.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 222.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 218.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 210.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 199.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 195.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 189.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 188.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 188.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 185.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 185.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 470.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 470.9
FF:10158-103A5 76 years, female 470.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 238.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 238.7
Samples: 4

Max nTPM: 246.3
Min nTPM: 233.8
Sample A Male 240.5
Sample B Male 246.3
Sample C Female 234.0
Sample D Female 233.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
74583118 Antisense, RP_051214_02_F02, Mouse strain C57BL/6J (56 days, male) 13.3
68910957 Antisense, RP_041209_01_A01, Mouse strain C57BL/6J (56 days, male) 13.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.