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TRAPPC2B
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA:8.5 nTPM
GTEx:10.4 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:32.0 nTPM
Mouse:81.7 nTPM
Allen mouse:4.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 8.5
Sample id Sample description nTPM
Hippocampus
nTPM: 8.0
1898 Male, age 80, left hemisphere 8.8
1855 Male, age 76, left hemisphere 8.7
2148 Female, age 91, left hemisphere 7.8
1911 Female, age 85, right hemisphere 7.7
2529 Female, age 94, left hemisphere 7.6
2621 Female, age 67, right hemisphere 7.5
Dentate gyrus
nTPM: 8.0
1927 Female, age 91, both hemispheres 8.6
2528 Male, age 74, both hemispheres 8.5
2010 Male, age 76, both hemispheres 8.2
2531 Female, age 67, both hemispheres 8.1
2246 Female, age 85, both hemispheres 7.4
2530 Female, age 94, left hemisphere 7.3
Entorhinal gyrus
nTPM: 8.0
1938 Female, age 85, left hemisphere 8.5
2613 Female, age 94, left hemisphere 8.4
1787 Male, age 76, left hemisphere 8.2
2686 Male, age 75, right hemisphere 7.7
2764 Male, age 80, right hemisphere 7.7
2117 Female, age 91, right hemisphere 7.4
Hippocampus, CA1
nTPM: 8.5
2749 Male, age 80, left hemisphere 9.4
2045 Male, age 76, both hemispheres 8.7
1873 Female, age 85, both hemispheres 8.3
2527 Male, age 74, both hemispheres 8.2
2082 Female, age 91, right hemisphere 7.9
Hippocampus, CA2
nTPM: 8.0
1892 Male, age 76, both hemispheres 8.5
1963 Male, age 80, left hemisphere 8.3
2437 Female, age 94, left hemisphere 8.2
2249 Male, age 74, both hemispheres 8.1
2113 Female, age 91, right hemisphere 7.9
1940 Female, age 85, left hemisphere 7.1
Hippocampus, CA3
nTPM: 8.2
1867 Male, age 76, both hemispheres 8.4
1891 Female, age 85, both hemispheres 8.4
2620 Female, age 94, left hemisphere 8.4
2137 Male, age 80, left hemisphere 8.2
2436 Male, age 74, both hemispheres 8.2
2861 Female, age 67, both hemispheres 7.5
Parahippocampal cortex
nTPM: 8.2
1850 Male, age 80, both hemispheres 8.7
2250 Female, age 67, right hemisphere 8.7
2245 Female, age 91, both hemispheres 8.5
2532 Female, age 72, left hemisphere 8.3
1990 Female, age 91, right hemisphere 8.2
2018 Male, age 76, both hemispheres 8.1
2693 Female, age 94, both hemispheres 8.0
1933 Female, age 85, both hemispheres 7.9
2622 Female, age 67, right hemisphere 7.9
2692 Male, age 74, both hemispheres 7.5
Perirhinal gyrus
nTPM: 8.3
1847 Female, age 91, left hemisphere 9.2
1841 Female, age 85, right hemisphere 8.7
1794 Male, age 80, right hemisphere 8.0
2848 Male, age 76, right hemisphere 8.0
2521 Female, age 94, right hemisphere 7.5
Subiculum
nTPM: 7.7
2619 Male, age 74, both hemispheres 8.4
2729 Female, age 91, right hemisphere 7.9
1901 Male, age 80, both hemispheres 7.8
1977 Female, age 85, both hemispheres 7.7
2042 Male, age 76, both hemispheres 7.4
2438 Female, age 94, left hemisphere 7.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.4
Samples: 197

Max nTPM: 38.0
Min nTPM: 4.8
Std nTPM: 3.0
Median nTPM: 10.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 38.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 19.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 16.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 15.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 15.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 15.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 14.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 14.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 14.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 14.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 14.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.1
FF:10169-103B7 60 years, female 40.8
FF:10153-102I9 76 years, female 25.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 32.0
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.1
Sample A Female 39.1
Sample B Female 28.1
Sample C Male 30.4
Sample D Male 30.4
Entorhinal cortex
nTPM: 24.8
Samples: 4

Max nTPM: 28.4
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 26.3
Sample C Male 28.4
Sample D Male 23.4
Subiculum
nTPM: 26.8
Samples: 4

Max nTPM: 33.3
Min nTPM: 19.5
Sample A Female 33.3
Sample B Female 19.5
Sample C Male 26.0
Sample D Male 28.2
Ventral hippocampus
nTPM: 29.3
Samples: 4

Max nTPM: 35.9
Min nTPM: 18.7
Sample A Female 31.3
Sample B Female 18.7
Sample C Male 31.3
Sample D Male 35.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 81.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 75.1
Samples: 4

Max nTPM: 77.7
Min nTPM: 69.7
Sample A Male 69.7
Sample B Male 75.6
Sample C Female 77.7
Sample D Female 77.2
Hippocampal formation
nTPM: 81.7
Samples: 4

Max nTPM: 92.4
Min nTPM: 75.0
Sample A Male 92.4
Sample B Male 78.6
Sample C Female 80.7
Sample D Female 75.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
68744940 Antisense, RP_050208_01_H11, Mouse strain C57BL/6J (56 days, male) 4.0

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