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SMIM3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA:20.3 nTPM
GTEx:11.9 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Mouse:12.2 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.0
2846 Female, age 79, unknown 19.8
2481 Female, age 94, left hemisphere 19.5
1781 Male, age 74, unknown 19.3
2290 Female, age 72, unknown 19.3
2288 Male, age 75, left hemisphere 18.9
1857 Female, age 85, left hemisphere 18.7
1854 Male, age 80, left hemisphere 18.6
2289 Male, age 61, right hemisphere 17.8
Claustrum
nTPM: 18.3
2196 Female, age 79, unknown 19.3
2645 Female, age 72, unknown 19.1
2198 Male, age 80, both hemispheres 18.5
2284 Female, age 91, both hemispheres 18.1
2292 Female, age 85, both hemispheres 18.1
1956 Male, age 74, unknown 17.9
2392 Female, age 94, both hemispheres 17.9
2568 Male, age 61, both hemispheres 17.9
2491 Male, age 75, both hemispheres 17.8
Globus pallidus, externus
nTPM: 20.3
2772 Female, age 79, unknown 20.9
2395 Male, age 75, both hemispheres 20.5
2567 Female, age 72, unknown 20.3
1996 Male, age 80, right hemisphere 20.2
2646 Male, age 61, right hemisphere 19.7
Globus pallidus, internus
nTPM: 19.4
2037 Male, age 80, right hemisphere 20.1
1818 Male, age 74, unknown 19.9
2483 Female, age 94, right hemisphere 19.7
2778 Female, age 91, both hemispheres 19.5
2566 Female, age 72, unknown 19.1
2111 Female, age 85, right hemisphere 18.7
2287 Male, age 75, right hemisphere 18.5
Nucleus accumbens
nTPM: 18.2
1806 Female, age 85, left hemisphere 18.4
2391 Female, age 94, left hemisphere 18.4
2732 Male, age 80, right hemisphere 18.4
1783 Male, age 74, unknown 18.3
1856 Female, age 91, right hemisphere 18.3
2698 Female, age 72, unknown 18.3
2286 Male, age 75, left hemisphere 18.2
2824 Male, age 61, right hemisphere 17.0
Nucleus basalis of Meynert
nTPM: 19.8
2569 Male, age 61, both hemispheres 20.9
2484 Female, age 94, left hemisphere 20.8
2821 Male, age 75, both hemispheres 18.9
2393 Male, age 80, right hemisphere 18.5
Nucleus of the diagonal band
nTPM: 17.4
1979 Male, age 74, unknown 17.9
1812 Female, age 91, both hemispheres 17.8
2775 Male, age 80, right hemisphere 17.3
2029 Male, age 61, right hemisphere 17.0
2195 Female, age 85, both hemispheres 16.9
Olfactory tubercle
nTPM: 17.6
1846 Male, age 80, right hemisphere 17.8
2856 Male, age 75, right hemisphere 17.8
2487 Female, age 94, left hemisphere 17.5
1998 Female, age 91, both hemispheres 17.3
Putamen
nTPM: 19.5
2489 Female, age 72, unknown 21.7
2482 Female, age 94, left hemisphere 20.6
2647 Male, age 75, left hemisphere 19.8
2466 Female, age 79, unknown 19.2
1937 Female, age 91, right hemisphere 18.7
1829 Male, age 74, unknown 18.5
1838 Male, age 80, right hemisphere 18.2
Septal nuclei
nTPM: 17.9
2199 Male, age 80, right hemisphere 19.4
2394 Male, age 61, left hemisphere 19.1
2031 Female, age 72, unknown 17.5
1960 Male, age 74, unknown 17.4
2629 Female, age 94, right hemisphere 17.4
2009 Female, age 91, both hemispheres 17.3
2059 Female, age 85, both hemispheres 17.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 40.9
Min nTPM: 1.8
Std nTPM: 5.7
Median nTPM: 7.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 40.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 38.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 34.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 27.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 26.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 26.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 23.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 22.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 21.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 20.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 20.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.2
Samples: 246

Max nTPM: 40.2
Min nTPM: 2.1
Std nTPM: 5.3
Median nTPM: 5.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 40.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 38.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 36.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 27.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 22.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 21.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 20.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 19.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 18.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 18.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 17.8
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Brain - Putamen (basal ganglia)
Average nTPM: 11.9
Samples: 205

Max nTPM: 47.6
Min nTPM: 3.4
Std nTPM: 7.1
Median nTPM: 9.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 47.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 38.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 37.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 36.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 33.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 30.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 30.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 28.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 28.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 27.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 26.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.4
FF:10164-103B2 76 years, female 19.4
Globus pallidus
Scaled Tags Per Million: 34.4
FF:10175-103C4 60 years, female 40.2
FF:10161-103A8 76 years, female 28.5
Nucleus accumbens
Scaled Tags Per Million: 7.2
FF:10037-101F1 23-56 years, mixed 7.2
Putamen
Scaled Tags Per Million: 9.9
FF:10176-103C5 60 years, female 9.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.2
Samples: 4

Max nTPM: 16.2
Min nTPM: 8.5
Sample A Male 9.1
Sample B Male 8.5
Sample C Female 16.2
Sample D Female 15.0
Septum
nTPM: 10.8
Samples: 4

Max nTPM: 14.8
Min nTPM: 6.5
Sample A Male 6.5
Sample B Male 8.9
Sample C Female 14.8
Sample D Female 13.0
Ventral forebrain
nTPM: 10.2
Samples: 4

Max nTPM: 14.4
Min nTPM: 6.9
Sample A Male 7.7
Sample B Male 6.9
Sample C Female 14.4
Sample D Female 11.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68301808 Antisense, RP_041130_01_H04, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
68301808 Antisense, RP_041130_01_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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