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SMIM3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.5 nTPM
HPA:20.5 nTPM
GTEx:11.1 nTPM
FANTOM5:18.6 Scaled Tags Per Million
Mouse:17.1 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.5
Sample id Sample description nTPM
Hippocampus
nTPM: 19.6
2621 Female, age 67, right hemisphere 19.9
1898 Male, age 80, left hemisphere 19.8
1855 Male, age 76, left hemisphere 19.7
2148 Female, age 91, left hemisphere 19.7
2529 Female, age 94, left hemisphere 19.3
1911 Female, age 85, right hemisphere 19.2
Dentate gyrus
nTPM: 19.6
2010 Male, age 76, both hemispheres 21.8
2530 Female, age 94, left hemisphere 20.3
1927 Female, age 91, both hemispheres 20.2
2528 Male, age 74, both hemispheres 18.9
2531 Female, age 67, both hemispheres 18.3
2246 Female, age 85, both hemispheres 18.0
Entorhinal gyrus
nTPM: 18.2
1787 Male, age 76, left hemisphere 18.8
2686 Male, age 75, right hemisphere 18.7
2117 Female, age 91, right hemisphere 18.6
2613 Female, age 94, left hemisphere 18.3
2764 Male, age 80, right hemisphere 17.5
1938 Female, age 85, left hemisphere 17.4
Hippocampus, CA1
nTPM: 19.7
2749 Male, age 80, left hemisphere 22.1
1873 Female, age 85, both hemispheres 19.9
2045 Male, age 76, both hemispheres 19.0
2527 Male, age 74, both hemispheres 18.9
2082 Female, age 91, right hemisphere 18.6
Hippocampus, CA2
nTPM: 20.5
1963 Male, age 80, left hemisphere 24.4
2437 Female, age 94, left hemisphere 20.5
2249 Male, age 74, both hemispheres 20.4
1892 Male, age 76, both hemispheres 20.1
2113 Female, age 91, right hemisphere 18.9
1940 Female, age 85, left hemisphere 18.5
Hippocampus, CA3
nTPM: 20.1
2436 Male, age 74, both hemispheres 26.8
2861 Female, age 67, both hemispheres 20.8
1867 Male, age 76, both hemispheres 19.9
1891 Female, age 85, both hemispheres 18.0
2137 Male, age 80, left hemisphere 17.8
2620 Female, age 94, left hemisphere 17.2
Parahippocampal cortex
nTPM: 18.2
2018 Male, age 76, both hemispheres 20.0
2622 Female, age 67, right hemisphere 19.0
2692 Male, age 74, both hemispheres 18.8
2245 Female, age 91, both hemispheres 18.3
1990 Female, age 91, right hemisphere 18.1
2532 Female, age 72, left hemisphere 18.0
2250 Female, age 67, right hemisphere 17.6
1850 Male, age 80, both hemispheres 17.5
2693 Female, age 94, both hemispheres 17.5
1933 Female, age 85, both hemispheres 17.3
Perirhinal gyrus
nTPM: 17.7
1794 Male, age 80, right hemisphere 18.0
1841 Female, age 85, right hemisphere 18.0
1847 Female, age 91, left hemisphere 17.8
2521 Female, age 94, right hemisphere 17.6
2848 Male, age 76, right hemisphere 17.0
Subiculum
nTPM: 18.5
2042 Male, age 76, both hemispheres 19.8
2619 Male, age 74, both hemispheres 18.8
2729 Female, age 91, right hemisphere 18.7
1901 Male, age 80, both hemispheres 18.1
1977 Female, age 85, both hemispheres 17.7
2438 Female, age 94, left hemisphere 17.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.1
Samples: 197

Max nTPM: 33.0
Min nTPM: 2.4
Std nTPM: 5.5
Median nTPM: 10.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 33.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 31.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 28.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 27.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 26.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 24.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 24.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 23.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 22.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 22.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 21.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.6
FF:10169-103B7 60 years, female 18.8
FF:10153-102I9 76 years, female 18.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 7.5
Sample A Male 8.7
Sample B Male 7.5
Sample C Female 14.7
Sample D Female 9.1
Hippocampal formation
nTPM: 17.1
Samples: 4

Max nTPM: 23.0
Min nTPM: 13.6
Sample A Male 14.9
Sample B Male 13.6
Sample C Female 23.0
Sample D Female 16.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
68301808 Antisense, RP_041130_01_H04, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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