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SMIM10L1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.1 nTPM
HPA:12.1 nTPM
GTEx:13.5 nTPM
FANTOM5:100.8 Scaled Tags Per Million
Mouse:103.9 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.1
2846 Female, age 79, unknown 12.1
1857 Female, age 85, left hemisphere 11.6
2290 Female, age 72, unknown 11.2
1854 Male, age 80, left hemisphere 11.1
2288 Male, age 75, left hemisphere 10.9
2481 Female, age 94, left hemisphere 10.9
1781 Male, age 74, unknown 10.7
2289 Male, age 61, right hemisphere 10.1
Claustrum
nTPM: 11.5
2491 Male, age 75, both hemispheres 12.0
2198 Male, age 80, both hemispheres 11.8
2292 Female, age 85, both hemispheres 11.8
2196 Female, age 79, unknown 11.7
1956 Male, age 74, unknown 11.6
2392 Female, age 94, both hemispheres 11.2
2568 Male, age 61, both hemispheres 11.2
2645 Female, age 72, unknown 11.1
2284 Female, age 91, both hemispheres 10.8
Globus pallidus, externus
nTPM: 12.1
2567 Female, age 72, unknown 13.2
2395 Male, age 75, both hemispheres 11.9
2772 Female, age 79, unknown 11.9
1996 Male, age 80, right hemisphere 11.8
2646 Male, age 61, right hemisphere 11.6
Globus pallidus, internus
nTPM: 11.9
2483 Female, age 94, right hemisphere 13.4
2287 Male, age 75, right hemisphere 12.8
2566 Female, age 72, unknown 12.1
2111 Female, age 85, right hemisphere 12.0
2778 Female, age 91, both hemispheres 11.9
1818 Male, age 74, unknown 10.8
2037 Male, age 80, right hemisphere 10.8
Nucleus accumbens
nTPM: 11.1
2698 Female, age 72, unknown 12.1
1806 Female, age 85, left hemisphere 11.6
1783 Male, age 74, unknown 11.5
1856 Female, age 91, right hemisphere 11.2
2824 Male, age 61, right hemisphere 10.9
2286 Male, age 75, left hemisphere 10.7
2391 Female, age 94, left hemisphere 10.6
2732 Male, age 80, right hemisphere 10.3
Nucleus basalis of Meynert
nTPM: 11.5
2569 Male, age 61, both hemispheres 12.4
2393 Male, age 80, right hemisphere 11.4
2484 Female, age 94, left hemisphere 11.4
2821 Male, age 75, both hemispheres 11.0
Nucleus of the diagonal band
nTPM: 11.1
2775 Male, age 80, right hemisphere 11.7
2195 Female, age 85, both hemispheres 11.4
1979 Male, age 74, unknown 11.2
1812 Female, age 91, both hemispheres 10.9
2029 Male, age 61, right hemisphere 10.2
Olfactory tubercle
nTPM: 10.8
1846 Male, age 80, right hemisphere 11.1
1998 Female, age 91, both hemispheres 10.9
2856 Male, age 75, right hemisphere 10.8
2487 Female, age 94, left hemisphere 10.6
Putamen
nTPM: 11.4
2647 Male, age 75, left hemisphere 12.0
2466 Female, age 79, unknown 11.8
1829 Male, age 74, unknown 11.5
1838 Male, age 80, right hemisphere 11.4
1937 Female, age 91, right hemisphere 11.1
2489 Female, age 72, unknown 11.0
2482 Female, age 94, left hemisphere 10.9
Septal nuclei
nTPM: 10.7
1960 Male, age 74, unknown 11.7
2031 Female, age 72, unknown 11.3
2199 Male, age 80, right hemisphere 10.6
2009 Female, age 91, both hemispheres 10.4
2394 Male, age 61, left hemisphere 10.4
2059 Female, age 85, both hemispheres 10.3
2629 Female, age 94, right hemisphere 10.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.5
Samples: 246

Max nTPM: 23.7
Min nTPM: 5.8
Std nTPM: 2.9
Median nTPM: 11.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 23.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 23.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 21.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 21.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 20.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 19.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 18.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 18.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 18.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 17.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 17.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.4
Samples: 246

Max nTPM: 21.9
Min nTPM: 4.4
Std nTPM: 2.6
Median nTPM: 12.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 21.9
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 20.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 19.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 19.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 19.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 18.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 18.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 17.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 17.0
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 16.7
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 16.6
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Brain - Putamen (basal ganglia)
Average nTPM: 13.5
Samples: 205

Max nTPM: 27.9
Min nTPM: 7.1
Std nTPM: 3.2
Median nTPM: 12.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 27.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 24.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 24.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 23.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 22.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 21.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 20.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 19.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 19.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 19.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 19.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.9
FF:10164-103B2 76 years, female 77.9
Globus pallidus
Scaled Tags Per Million: 94.9
FF:10175-103C4 60 years, female 104.1
FF:10161-103A8 76 years, female 85.6
Nucleus accumbens
Scaled Tags Per Million: 70.0
FF:10037-101F1 23-56 years, mixed 70.0
Putamen
Scaled Tags Per Million: 100.8
FF:10176-103C5 60 years, female 100.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 103.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 103.9
Samples: 4

Max nTPM: 112.9
Min nTPM: 95.7
Sample A Male 112.9
Sample B Male 95.7
Sample C Female 107.3
Sample D Female 99.7
Septum
nTPM: 93.0
Samples: 4

Max nTPM: 101.6
Min nTPM: 85.4
Sample A Male 85.4
Sample B Male 91.9
Sample C Female 93.1
Sample D Female 101.6
Ventral forebrain
nTPM: 99.7
Samples: 4

Max nTPM: 102.6
Min nTPM: 97.2
Sample A Male 97.2
Sample B Male 101.3
Sample C Female 102.6
Sample D Female 97.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
71022918 Antisense, RP_050719_01_G10, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 2.4
71022918 Antisense, RP_050719_01_G10, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.