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CHURC1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:29.8 nTPM
HPA:29.8 nTPM
GTEx:31.7 nTPM
FANTOM5:79.8 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:95.6 nTPM
Allen mouse:4.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040072
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.8
Sample id Sample description nTPM
Hippocampus
nTPM: 28.6
1898 Male, age 80, left hemisphere 30.4
1911 Female, age 85, right hemisphere 29.8
1855 Male, age 76, left hemisphere 29.0
2529 Female, age 94, left hemisphere 28.8
2621 Female, age 67, right hemisphere 27.2
2148 Female, age 91, left hemisphere 26.4
Dentate gyrus
nTPM: 28.2
2528 Male, age 74, both hemispheres 29.7
2246 Female, age 85, both hemispheres 29.6
2010 Male, age 76, both hemispheres 28.9
2530 Female, age 94, left hemisphere 27.4
1927 Female, age 91, both hemispheres 27.3
2531 Female, age 67, both hemispheres 26.4
Entorhinal gyrus
nTPM: 28.1
1938 Female, age 85, left hemisphere 31.1
2117 Female, age 91, right hemisphere 29.3
2764 Male, age 80, right hemisphere 28.7
2613 Female, age 94, left hemisphere 26.8
2686 Male, age 75, right hemisphere 26.4
1787 Male, age 76, left hemisphere 26.3
Hippocampus, CA1
nTPM: 28.8
1873 Female, age 85, both hemispheres 31.0
2082 Female, age 91, right hemisphere 28.7
2527 Male, age 74, both hemispheres 28.5
2749 Male, age 80, left hemisphere 28.3
2045 Male, age 76, both hemispheres 27.6
Hippocampus, CA2
nTPM: 28.8
1940 Female, age 85, left hemisphere 29.8
2249 Male, age 74, both hemispheres 29.3
1963 Male, age 80, left hemisphere 29.1
2113 Female, age 91, right hemisphere 28.9
1892 Male, age 76, both hemispheres 28.6
2437 Female, age 94, left hemisphere 27.3
Hippocampus, CA3
nTPM: 27.1
1891 Female, age 85, both hemispheres 30.6
2137 Male, age 80, left hemisphere 29.1
1867 Male, age 76, both hemispheres 26.9
2436 Male, age 74, both hemispheres 26.7
2620 Female, age 94, left hemisphere 25.5
2861 Female, age 67, both hemispheres 24.0
Parahippocampal cortex
nTPM: 28.9
1933 Female, age 85, both hemispheres 31.3
1850 Male, age 80, both hemispheres 29.9
2250 Female, age 67, right hemisphere 29.9
2018 Male, age 76, both hemispheres 29.7
2692 Male, age 74, both hemispheres 29.4
2693 Female, age 94, both hemispheres 29.2
2532 Female, age 72, left hemisphere 29.1
1990 Female, age 91, right hemisphere 28.8
2245 Female, age 91, both hemispheres 27.1
2622 Female, age 67, right hemisphere 24.6
Perirhinal gyrus
nTPM: 28.7
1841 Female, age 85, right hemisphere 31.2
2521 Female, age 94, right hemisphere 29.1
1794 Male, age 80, right hemisphere 29.0
2848 Male, age 76, right hemisphere 28.4
1847 Female, age 91, left hemisphere 26.0
Subiculum
nTPM: 29.8
2438 Female, age 94, left hemisphere 31.4
2729 Female, age 91, right hemisphere 30.4
1901 Male, age 80, both hemispheres 30.1
2042 Male, age 76, both hemispheres 30.0
1977 Female, age 85, both hemispheres 29.2
2619 Male, age 74, both hemispheres 27.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.7
Samples: 197

Max nTPM: 76.2
Min nTPM: 18.4
Std nTPM: 6.4
Median nTPM: 31.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 76.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 48.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 47.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 46.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 45.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 43.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 43.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 42.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 42.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 42.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 41.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.8
FF:10169-103B7 60 years, female 89.9
FF:10153-102I9 76 years, female 69.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.3
Samples: 4

Max nTPM: 40.7
Min nTPM: 21.5
Sample A Female 40.7
Sample B Female 27.3
Sample C Male 31.8
Sample D Male 21.5
Entorhinal cortex
nTPM: 26.2
Samples: 4

Max nTPM: 30.9
Min nTPM: 20.7
Sample A Female 25.4
Sample B Female 30.9
Sample C Male 27.7
Sample D Male 20.7
Subiculum
nTPM: 27.4
Samples: 4

Max nTPM: 37.1
Min nTPM: 22.3
Sample A Female 37.1
Sample B Female 26.6
Sample C Male 22.3
Sample D Male 23.7
Ventral hippocampus
nTPM: 26.2
Samples: 4

Max nTPM: 31.3
Min nTPM: 24.0
Sample A Female 31.3
Sample B Female 24.8
Sample C Male 24.0
Sample D Male 24.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 95.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 87.1
Samples: 4

Max nTPM: 91.2
Min nTPM: 81.2
Sample A Male 85.3
Sample B Male 91.2
Sample C Female 90.5
Sample D Female 81.2
Hippocampal formation
nTPM: 95.6
Samples: 4

Max nTPM: 109.1
Min nTPM: 82.8
Sample A Male 109.1
Sample B Male 82.8
Sample C Female 97.4
Sample D Female 93.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
69169511 Antisense, RP_050321_03_G01, Mouse strain C57BL/6J (56 days, male) 4.0

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