ABOUTMENU
HELP
NEWS
PECAM1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA:23.1 nTPM
GTEx:20.2 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:15.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.1
2666 Male, age 74, left hemisphere 24.9
2019 Male, age 18, unknown 21.4
1870 Female, age 42, unknown 21.2
2828 Female, age 72, unknown 20.9
1830 Male, age 51, unknown 19.5
1833 Male, age 53, unknown 18.5
2411 Female, age 72, unknown 18.3
1827 Male, age 72, unknown 16.7
2219 Male, age 76, both hemispheres 15.2
2586 Male, age 75, left hemisphere 14.1
Dorsal raphe nucleus
nTPM: 19.0
2016 Female, age 72, unknown 19.8
1828 Male, age 53, unknown 19.6
2750 Male, age 76, both hemispheres 19.2
2298 Female, age 72, unknown 18.5
2047 Male, age 72, unknown 17.7
Inferior colliculus
nTPM: 20.9
1890 Male, age 53, unknown 22.3
2097 Female, age 72, unknown 21.9
1848 Female, age 42, unknown 20.0
2849 Male, age 72, unknown 19.2
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Pedunculopontine tegmental nucleus
nTPM: 23.0
2338 Male, age 61, both hemispheres 30.8
2334 Male, age 80, both hemispheres 20.9
1921 Female, age 85, both hemispheres 17.4
Periaquaductal grey, anterior
nTPM: 18.9
2502 Female, age 75, unknown 22.3
1947 Male, age 18, unknown 17.7
1795 Male, age 51, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 18.1
1831 Male, age 72, unknown 20.6
2464 Female, age 72, unknown 19.0
1840 Male, age 53, unknown 16.9
2850 Male, age 76, both hemispheres 15.8
Periaquaductal grey, lateral
nTPM: 18.4
2053 Male, age 18, unknown 19.7
2140 Male, age 76, both hemispheres 18.4
2272 Male, age 74, both hemispheres 17.1
Pretectal area
nTPM: 18.3
2316 Male, age 76, right hemisphere 21.9
1817 Female, age 42, unknown 21.4
1816 Male, age 51, unknown 19.5
1815 Male, age 53, unknown 19.3
2007 Male, age 72, unknown 19.2
1944 Female, age 72, unknown 18.5
2224 Female, age 72, unknown 18.5
2667 Female, age 75, unknown 16.9
2825 Male, age 18, unknown 16.7
2273 Male, age 74, both hemispheres 15.3
2407 Male, age 75, both hemispheres 14.7
Red nucleus
nTPM: 23.1
1954 Female, age 42, unknown 27.7
1904 Male, age 53, unknown 25.1
2503 Female, age 72, unknown 24.4
1821 Female, age 72, unknown 24.3
2823 Male, age 76, right hemisphere 23.7
2769 Male, age 72, unknown 23.6
1865 Male, age 51, unknown 23.2
2227 Male, age 72, unknown 23.2
2785 Male, age 18, unknown 21.5
2588 Male, age 74, left hemisphere 21.3
2725 Female, age 75, unknown 20.8
2584 Male, age 75, left hemisphere 18.5
Substantia nigra
nTPM: 20.2
2665 Male, age 74, both hemispheres 30.6
2699 Male, age 18, unknown 20.2
1851 Male, age 51, unknown 20.1
2241 Male, age 72, unknown 19.9
2409 Female, age 72, unknown 19.8
2590 Female, age 75, unknown 19.7
1916 Female, age 42, unknown 19.4
1889 Female, age 72, unknown 19.2
2583 Male, age 75, right hemisphere 17.0
1941 Male, age 53, unknown 15.8
Superior colliculus
nTPM: 19.1
2087 Female, age 72, unknown 21.5
1895 Male, age 76, right hemisphere 21.1
2587 Male, age 74, left hemisphere 20.1
1913 Female, age 42, unknown 19.8
1839 Male, age 51, unknown 19.4
1995 Male, age 72, unknown 19.4
2668 Female, age 75, unknown 18.9
2261 Male, age 18, unknown 18.5
1796 Male, age 53, unknown 18.0
2664 Male, age 75, both hemispheres 14.5
Ventral tegmental area
nTPM: 20.4
2021 Male, age 53, unknown 23.0
2218 Male, age 76, both hemispheres 20.8
2410 Female, age 72, unknown 20.6
1915 Female, age 42, unknown 20.4
1942 Male, age 51, unknown 19.3
2223 Female, age 72, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 139

Max nTPM: 138.2
Min nTPM: 5.2
Std nTPM: 15.8
Median nTPM: 16.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 138.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 73.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 73.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 71.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 47.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 46.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 45.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 42.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 39.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 38.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.0
FF:10158-103A5 76 years, female 72.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 14.8
Min nTPM: 9.0
Sample A Female 13.3
Sample B Female 10.5
Sample C Male 14.8
Sample D Male 9.0
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 6.9
Min nTPM: 4.9
Sample B Female 6.9
Sample C Male 5.9
Sample D Male 4.9
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 31.5
Min nTPM: 10.5
Sample A Female 13.5
Sample B Female 31.5
Sample C Male 10.5
Sample D Male 15.9
Superior colliculi
nTPM: 14.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 11.6
Sample A Female 15.4
Sample B Female 11.6
Sample C Male 15.0
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 16.3
Min nTPM: 14.5
Sample A Male 14.5
Sample B Male 16.3
Sample C Female 15.4
Sample D Female 14.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68443238 Antisense, RP_050111_01_F03, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.