ABOUTMENU
HELP
NEWS
CCNQ
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:21.5 nTPM
FANTOM5:56.6 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:19.4 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA050137
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.5
1781 Male, age 74, unknown 19.4
2288 Male, age 75, left hemisphere 18.2
1854 Male, age 80, left hemisphere 17.7
2290 Female, age 72, unknown 17.4
2846 Female, age 79, unknown 17.2
2289 Male, age 61, right hemisphere 17.1
2481 Female, age 94, left hemisphere 16.7
1857 Female, age 85, left hemisphere 16.4
Claustrum
nTPM: 20.4
2568 Male, age 61, both hemispheres 21.7
2198 Male, age 80, both hemispheres 21.6
2284 Female, age 91, both hemispheres 21.5
2292 Female, age 85, both hemispheres 21.2
2491 Male, age 75, both hemispheres 20.6
1956 Male, age 74, unknown 19.9
2196 Female, age 79, unknown 19.7
2645 Female, age 72, unknown 18.8
2392 Female, age 94, both hemispheres 18.3
Globus pallidus, externus
nTPM: 20.2
2567 Female, age 72, unknown 21.4
1996 Male, age 80, right hemisphere 20.8
2772 Female, age 79, unknown 20.1
2395 Male, age 75, both hemispheres 19.2
2646 Male, age 61, right hemisphere 19.2
Globus pallidus, internus
nTPM: 21.3
2778 Female, age 91, both hemispheres 26.3
2111 Female, age 85, right hemisphere 21.9
2566 Female, age 72, unknown 21.5
2037 Male, age 80, right hemisphere 21.3
2287 Male, age 75, right hemisphere 20.5
1818 Male, age 74, unknown 18.9
2483 Female, age 94, right hemisphere 18.5
Nucleus accumbens
nTPM: 18.1
2286 Male, age 75, left hemisphere 19.6
2732 Male, age 80, right hemisphere 19.3
1806 Female, age 85, left hemisphere 18.0
2391 Female, age 94, left hemisphere 17.9
1783 Male, age 74, unknown 17.7
2698 Female, age 72, unknown 17.6
2824 Male, age 61, right hemisphere 17.3
1856 Female, age 91, right hemisphere 17.0
Nucleus basalis of Meynert
nTPM: 18.0
2569 Male, age 61, both hemispheres 18.4
2484 Female, age 94, left hemisphere 18.3
2821 Male, age 75, both hemispheres 17.9
2393 Male, age 80, right hemisphere 17.3
Nucleus of the diagonal band
nTPM: 19.6
2195 Female, age 85, both hemispheres 20.4
2775 Male, age 80, right hemisphere 20.0
1812 Female, age 91, both hemispheres 19.7
2029 Male, age 61, right hemisphere 19.7
1979 Male, age 74, unknown 18.4
Olfactory tubercle
nTPM: 20.2
2487 Female, age 94, left hemisphere 23.2
1998 Female, age 91, both hemispheres 20.1
2856 Male, age 75, right hemisphere 19.5
1846 Male, age 80, right hemisphere 18.0
Putamen
nTPM: 17.8
2466 Female, age 79, unknown 18.9
2647 Male, age 75, left hemisphere 18.7
1937 Female, age 91, right hemisphere 18.5
2489 Female, age 72, unknown 18.1
2482 Female, age 94, left hemisphere 17.5
1829 Male, age 74, unknown 16.9
1838 Male, age 80, right hemisphere 15.9
Septal nuclei
nTPM: 18.8
1960 Male, age 74, unknown 20.5
2031 Female, age 72, unknown 20.1
2629 Female, age 94, right hemisphere 19.7
2059 Female, age 85, both hemispheres 18.3
2394 Male, age 61, left hemisphere 18.2
2009 Female, age 91, both hemispheres 17.7
2199 Male, age 80, right hemisphere 17.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.5
Samples: 246

Max nTPM: 36.2
Min nTPM: 8.3
Std nTPM: 5.2
Median nTPM: 18.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 36.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 35.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 34.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 32.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 32.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 32.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 30.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 30.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 30.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 29.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 29.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.3
Samples: 246

Max nTPM: 42.4
Min nTPM: 5.1
Std nTPM: 4.8
Median nTPM: 18.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 42.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 36.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 35.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 34.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 33.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 30.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 30.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 29.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 29.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 28.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 28.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 21.5
Samples: 205

Max nTPM: 43.5
Min nTPM: 6.1
Std nTPM: 5.9
Median nTPM: 20.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 43.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 43.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 39.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 37.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 36.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 36.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 36.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 34.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 33.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 33.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 33.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.1
FF:10164-103B2 76 years, female 16.1
Globus pallidus
Scaled Tags Per Million: 56.6
FF:10175-103C4 60 years, female 75.7
FF:10161-103A8 76 years, female 37.5
Nucleus accumbens
Scaled Tags Per Million: 20.5
FF:10037-101F1 23-56 years, mixed 20.5
Putamen
Scaled Tags Per Million: 22.1
FF:10176-103C5 60 years, female 22.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 6.0
Sample C Male 6.3
Sample D Male 5.0
Putamen
nTPM: 6.2
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 5.7
Sample C Male 7.0
Sample D Male 6.5
Septum
nTPM: 5.7
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Female 5.3
Sample B Female 5.9
Sample C Male 6.7
Sample D Male 4.9
Ventral pallidum
nTPM: 5.6
Samples: 4

Max nTPM: 5.9
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 5.9
Sample C Male 5.6
Sample D Male 5.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.5
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.3
Sample A Male 17.1
Sample B Male 17.5
Sample C Female 15.3
Sample D Female 20.1
Septum
nTPM: 17.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 15.5
Sample A Male 19.3
Sample B Male 18.3
Sample C Female 18.2
Sample D Female 15.5
Ventral forebrain
nTPM: 19.4
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.7
Sample A Male 19.7
Sample B Male 17.7
Sample C Female 19.1
Sample D Female 21.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68151450 Antisense, RP_041116_01_C09, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.3
68151450 Antisense, RP_041116_01_C09, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.