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TIMM23
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:48.7 nTPM
HPA:48.7 nTPM
GTEx:42.3 nTPM
FANTOM5:2.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA031408
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.8
2481 Female, age 94, left hemisphere 51.3
2288 Male, age 75, left hemisphere 47.9
2846 Female, age 79, unknown 47.9
1854 Male, age 80, left hemisphere 47.4
1857 Female, age 85, left hemisphere 47.3
1781 Male, age 74, unknown 45.5
2290 Female, age 72, unknown 45.2
2289 Male, age 61, right hemisphere 42.3
Claustrum
nTPM: 44.9
2198 Male, age 80, both hemispheres 46.8
1956 Male, age 74, unknown 46.6
2196 Female, age 79, unknown 45.4
2392 Female, age 94, both hemispheres 45.4
2491 Male, age 75, both hemispheres 44.9
2284 Female, age 91, both hemispheres 44.4
2568 Male, age 61, both hemispheres 44.2
2645 Female, age 72, unknown 44.0
2292 Female, age 85, both hemispheres 42.2
Globus pallidus, externus
nTPM: 44.8
2772 Female, age 79, unknown 50.5
2395 Male, age 75, both hemispheres 46.6
1996 Male, age 80, right hemisphere 46.4
2646 Male, age 61, right hemisphere 40.9
2567 Female, age 72, unknown 39.5
Globus pallidus, internus
nTPM: 45.6
2287 Male, age 75, right hemisphere 48.9
1818 Male, age 74, unknown 48.1
2483 Female, age 94, right hemisphere 47.7
2778 Female, age 91, both hemispheres 45.4
2037 Male, age 80, right hemisphere 45.3
2566 Female, age 72, unknown 42.2
2111 Female, age 85, right hemisphere 41.5
Nucleus accumbens
nTPM: 46.8
1856 Female, age 91, right hemisphere 52.0
2286 Male, age 75, left hemisphere 51.0
2391 Female, age 94, left hemisphere 49.0
2698 Female, age 72, unknown 46.1
1806 Female, age 85, left hemisphere 45.9
1783 Male, age 74, unknown 44.5
2824 Male, age 61, right hemisphere 44.3
2732 Male, age 80, right hemisphere 41.7
Nucleus basalis of Meynert
nTPM: 44.1
2393 Male, age 80, right hemisphere 46.4
2821 Male, age 75, both hemispheres 45.9
2484 Female, age 94, left hemisphere 44.1
2569 Male, age 61, both hemispheres 40.3
Nucleus of the diagonal band
nTPM: 48.5
1812 Female, age 91, both hemispheres 51.4
2775 Male, age 80, right hemisphere 51.2
2029 Male, age 61, right hemisphere 49.2
2195 Female, age 85, both hemispheres 46.6
1979 Male, age 74, unknown 43.9
Olfactory tubercle
nTPM: 48.7
1998 Female, age 91, both hemispheres 51.8
1846 Male, age 80, right hemisphere 50.3
2487 Female, age 94, left hemisphere 46.9
2856 Male, age 75, right hemisphere 45.9
Putamen
nTPM: 46.1
2482 Female, age 94, left hemisphere 49.7
1937 Female, age 91, right hemisphere 47.9
1838 Male, age 80, right hemisphere 47.0
2466 Female, age 79, unknown 46.7
1829 Male, age 74, unknown 45.1
2647 Male, age 75, left hemisphere 44.8
2489 Female, age 72, unknown 41.8
Septal nuclei
nTPM: 46.5
2031 Female, age 72, unknown 51.6
1960 Male, age 74, unknown 49.8
2629 Female, age 94, right hemisphere 48.3
2009 Female, age 91, both hemispheres 47.7
2199 Male, age 80, right hemisphere 43.8
2059 Female, age 85, both hemispheres 43.7
2394 Male, age 61, left hemisphere 40.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.2
Samples: 246

Max nTPM: 74.7
Min nTPM: 23.2
Std nTPM: 8.3
Median nTPM: 39.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 74.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 69.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 67.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 67.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 66.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 65.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 64.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 58.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 56.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.4
Samples: 246

Max nTPM: 66.1
Min nTPM: 26.1
Std nTPM: 6.7
Median nTPM: 39.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 66.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 61.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 60.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 59.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 56.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 56.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 56.1
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 55.6
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 55.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 55.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 55.2
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Brain - Putamen (basal ganglia)
Average nTPM: 42.3
Samples: 205

Max nTPM: 83.5
Min nTPM: 26.0
Std nTPM: 8.3
Median nTPM: 41.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 83.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 74.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 62.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 61.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 59.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 59.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 58.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 58.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 57.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 57.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 57.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.0
FF:10164-103B2 76 years, female 2.0
Globus pallidus
Scaled Tags Per Million: 1.8
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 1.2
Nucleus accumbens
Scaled Tags Per Million: 1.6
FF:10037-101F1 23-56 years, mixed 1.6
Putamen
Scaled Tags Per Million: 1.2
FF:10176-103C5 60 years, female 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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