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ZNF488
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.0 nTPM
HPA:18.0 nTPM
GTEx:23.3 nTPM
FANTOM5:90.8 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:3.1 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.0
Sample id Sample description nTPM
Hippocampus
nTPM: 13.7
1911 Female, age 85, right hemisphere 15.5
1898 Male, age 80, left hemisphere 14.0
2148 Female, age 91, left hemisphere 13.3
1855 Male, age 76, left hemisphere 13.1
2529 Female, age 94, left hemisphere 13.1
2621 Female, age 67, right hemisphere 13.1
Dentate gyrus
nTPM: 13.4
2531 Female, age 67, both hemispheres 18.5
2530 Female, age 94, left hemisphere 16.2
2528 Male, age 74, both hemispheres 12.1
2010 Male, age 76, both hemispheres 12.0
2246 Female, age 85, both hemispheres 11.7
1927 Female, age 91, both hemispheres 9.7
Entorhinal gyrus
nTPM: 13.4
2613 Female, age 94, left hemisphere 20.3
1938 Female, age 85, left hemisphere 14.1
1787 Male, age 76, left hemisphere 13.6
2117 Female, age 91, right hemisphere 12.7
2764 Male, age 80, right hemisphere 12.1
2686 Male, age 75, right hemisphere 7.3
Hippocampus, CA1
nTPM: 14.3
2749 Male, age 80, left hemisphere 20.8
2045 Male, age 76, both hemispheres 14.4
2527 Male, age 74, both hemispheres 13.5
1873 Female, age 85, both hemispheres 12.1
2082 Female, age 91, right hemisphere 10.9
Hippocampus, CA2
nTPM: 11.6
2249 Male, age 74, both hemispheres 13.8
2113 Female, age 91, right hemisphere 12.8
2437 Female, age 94, left hemisphere 12.5
1940 Female, age 85, left hemisphere 11.0
1963 Male, age 80, left hemisphere 10.5
1892 Male, age 76, both hemispheres 8.8
Hippocampus, CA3
nTPM: 18.0
2137 Male, age 80, left hemisphere 29.1
2620 Female, age 94, left hemisphere 28.4
2861 Female, age 67, both hemispheres 14.1
1891 Female, age 85, both hemispheres 13.9
1867 Male, age 76, both hemispheres 12.4
2436 Male, age 74, both hemispheres 10.3
Parahippocampal cortex
nTPM: 11.0
2245 Female, age 91, both hemispheres 14.5
2018 Male, age 76, both hemispheres 13.6
2692 Male, age 74, both hemispheres 12.6
2693 Female, age 94, both hemispheres 12.0
2532 Female, age 72, left hemisphere 11.7
1850 Male, age 80, both hemispheres 11.5
1933 Female, age 85, both hemispheres 10.2
1990 Female, age 91, right hemisphere 9.8
2250 Female, age 67, right hemisphere 8.0
2622 Female, age 67, right hemisphere 5.9
Perirhinal gyrus
nTPM: 10.7
2521 Female, age 94, right hemisphere 12.4
1847 Female, age 91, left hemisphere 11.7
1794 Male, age 80, right hemisphere 10.6
2848 Male, age 76, right hemisphere 9.6
1841 Female, age 85, right hemisphere 9.1
Subiculum
nTPM: 13.8
1901 Male, age 80, both hemispheres 19.4
2042 Male, age 76, both hemispheres 19.3
2729 Female, age 91, right hemisphere 12.6
1977 Female, age 85, both hemispheres 11.5
2619 Male, age 74, both hemispheres 11.0
2438 Female, age 94, left hemisphere 8.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.3
Samples: 197

Max nTPM: 61.3
Min nTPM: 0.8
Std nTPM: 11.3
Median nTPM: 22.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 61.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 58.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 53.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 52.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 51.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 48.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 48.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 46.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 45.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 44.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 44.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 90.8
FF:10169-103B7 60 years, female 126.6
FF:10153-102I9 76 years, female 55.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2.8
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.1
Sample A Female 4.1
Sample B Female 2.1
Sample C Male 2.9
Sample D Male 2.1
Entorhinal cortex
nTPM: 2.1
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.7
Sample A Female 2.0
Sample B Female 2.1
Sample C Male 1.7
Sample D Male 2.4
Subiculum
nTPM: 1.9
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.8
Sample A Female 1.9
Sample B Female 1.8
Sample C Male 1.8
Sample D Male 2.1
Ventral hippocampus
nTPM: 2.3
Samples: 4

Max nTPM: 2.5
Min nTPM: 2.0
Sample A Female 2.5
Sample B Female 2.0
Sample C Male 2.2
Sample D Male 2.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.7
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.3
Sample A Male 3.0
Sample B Male 2.3
Sample C Female 2.7
Sample D Female 2.8
Hippocampal formation
nTPM: 3.1
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.5
Sample A Male 2.9
Sample B Male 2.5
Sample C Female 3.7
Sample D Female 3.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
70300061 Antisense, RP_050602_04_B10, Mouse strain C57BL/6J (56 days, male) 0.1

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