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PCDHB16
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.9 nTPM
HPA:0.9 nTPM
GTEx:1.0 nTPM
FANTOM5:9.6 Scaled Tags Per Million
Mouse:8.4 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.4
2289 Male, age 61, right hemisphere 0.8
2290 Female, age 72, unknown 0.6
1854 Male, age 80, left hemisphere 0.4
2288 Male, age 75, left hemisphere 0.4
2846 Female, age 79, unknown 0.3
1857 Female, age 85, left hemisphere 0.2
2481 Female, age 94, left hemisphere 0.2
1781 Male, age 74, unknown 0.1
Claustrum
nTPM: 0.9
2284 Female, age 91, both hemispheres 1.7
2392 Female, age 94, both hemispheres 1.1
1956 Male, age 74, unknown 1.0
2645 Female, age 72, unknown 1.0
2292 Female, age 85, both hemispheres 0.8
2196 Female, age 79, unknown 0.7
2198 Male, age 80, both hemispheres 0.7
2491 Male, age 75, both hemispheres 0.7
2568 Male, age 61, both hemispheres 0.5
Globus pallidus, externus
nTPM: 0.6
1996 Male, age 80, right hemisphere 1.0
2395 Male, age 75, both hemispheres 0.5
2772 Female, age 79, unknown 0.5
2567 Female, age 72, unknown 0.4
2646 Male, age 61, right hemisphere 0.4
Globus pallidus, internus
nTPM: 0.8
2111 Female, age 85, right hemisphere 1.7
2037 Male, age 80, right hemisphere 1.0
2287 Male, age 75, right hemisphere 1.0
2778 Female, age 91, both hemispheres 0.7
2566 Female, age 72, unknown 0.5
1818 Male, age 74, unknown 0.4
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.6
2732 Male, age 80, right hemisphere 1.4
2824 Male, age 61, right hemisphere 1.0
2698 Female, age 72, unknown 0.8
1783 Male, age 74, unknown 0.5
1856 Female, age 91, right hemisphere 0.5
1806 Female, age 85, left hemisphere 0.3
2286 Male, age 75, left hemisphere 0.3
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.7
2569 Male, age 61, both hemispheres 1.1
2393 Male, age 80, right hemisphere 0.9
2484 Female, age 94, left hemisphere 0.3
2821 Male, age 75, both hemispheres 0.3
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 1.5
2029 Male, age 61, right hemisphere 0.7
2195 Female, age 85, both hemispheres 0.5
1812 Female, age 91, both hemispheres 0.1
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.4
1998 Female, age 91, both hemispheres 0.7
2487 Female, age 94, left hemisphere 0.5
2856 Male, age 75, right hemisphere 0.5
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 0.7
1829 Male, age 74, unknown 1.0
1937 Female, age 91, right hemisphere 1.0
2489 Female, age 72, unknown 0.8
2466 Female, age 79, unknown 0.7
2647 Male, age 75, left hemisphere 0.7
1838 Male, age 80, right hemisphere 0.5
2482 Female, age 94, left hemisphere 0.4
Septal nuclei
nTPM: 0.9
2199 Male, age 80, right hemisphere 2.4
2629 Female, age 94, right hemisphere 1.1
2394 Male, age 61, left hemisphere 0.9
2009 Female, age 91, both hemispheres 0.8
2059 Female, age 85, both hemispheres 0.8
2031 Female, age 72, unknown 0.4
1960 Male, age 74, unknown 0.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.0
Samples: 246

Max nTPM: 2.8
Min nTPM: 0.4
Std nTPM: 0.4
Median nTPM: 0.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 2.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 2.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 2.5
Min nTPM: 0.3
Std nTPM: 0.3
Median nTPM: 0.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 2.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 2.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 2.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 1.9
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 1.7
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 1.7
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 1.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 1.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 1.5
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 1.4
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Brain - Putamen (basal ganglia)
Average nTPM: 1.0
Samples: 205

Max nTPM: 2.0
Min nTPM: 0.4
Std nTPM: 0.3
Median nTPM: 0.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 2.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 2.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 1.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1.6
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 1.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.6
FF:10164-103B2 76 years, female 9.6
Globus pallidus
Scaled Tags Per Million: 7.3
FF:10161-103A8 76 years, female 9.2
FF:10175-103C4 60 years, female 5.5
Nucleus accumbens
Scaled Tags Per Million: 8.8
FF:10037-101F1 23-56 years, mixed 8.8
Putamen
Scaled Tags Per Million: 4.6
FF:10176-103C5 60 years, female 4.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.4
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.3
Sample A Male 8.5
Sample B Male 8.6
Sample C Female 7.3
Sample D Female 9.1
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.7
Sample A Male 5.7
Sample B Male 5.9
Sample C Female 5.9
Sample D Female 6.1
Ventral forebrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.9
Sample A Male 7.1
Sample B Male 7.7
Sample C Female 8.2
Sample D Female 6.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
1908 Antisense, RP_040428_01_G08, Mouse strain C57BL/6J (56 days, male) 0.4
1909 Antisense, RP_040428_01_G08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.5
1908 Antisense, RP_040428_01_G08, Mouse strain C57BL/6J (56 days, male) 0.5
1909 Antisense, RP_040428_01_G08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.