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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.8 nTPM
HPA:11.8 nTPM
GTEx:22.3 nTPM
FANTOM5:32.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
1870 Female, age 42, unknown 11.9
2411 Female, age 72, unknown 11.9
1830 Male, age 51, unknown 11.8
2828 Female, age 72, unknown 11.8
2586 Male, age 75, left hemisphere 11.7
2019 Male, age 18, unknown 11.5
1833 Male, age 53, unknown 11.2
1827 Male, age 72, unknown 10.6
2666 Male, age 74, left hemisphere 9.8
2219 Male, age 76, both hemispheres 7.5
Dorsal raphe nucleus
nTPM: 10.8
2750 Male, age 76, both hemispheres 12.5
2047 Male, age 72, unknown 10.9
2298 Female, age 72, unknown 10.7
1828 Male, age 53, unknown 10.2
2016 Female, age 72, unknown 9.6
Inferior colliculus
nTPM: 10.5
1848 Female, age 42, unknown 11.9
2849 Male, age 72, unknown 10.9
1890 Male, age 53, unknown 10.3
2097 Female, age 72, unknown 9.0
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Pedunculopontine tegmental nucleus
nTPM: 10.5
1921 Female, age 85, both hemispheres 13.5
2334 Male, age 80, both hemispheres 9.4
2338 Male, age 61, both hemispheres 8.7
Periaquaductal grey, anterior
nTPM: 11.1
2502 Female, age 75, unknown 12.0
1947 Male, age 18, unknown 11.3
1795 Male, age 51, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 10.2
1831 Male, age 72, unknown 11.0
1840 Male, age 53, unknown 10.8
2850 Male, age 76, both hemispheres 10.3
2464 Female, age 72, unknown 8.7
Periaquaductal grey, lateral
nTPM: 9.7
2272 Male, age 74, both hemispheres 10.4
2053 Male, age 18, unknown 10.0
2140 Male, age 76, both hemispheres 8.9
Pretectal area
nTPM: 10.0
1816 Male, age 51, unknown 11.2
2007 Male, age 72, unknown 10.7
2407 Male, age 75, both hemispheres 10.6
1817 Female, age 42, unknown 10.4
1944 Female, age 72, unknown 10.3
2825 Male, age 18, unknown 10.3
2273 Male, age 74, both hemispheres 10.0
2667 Female, age 75, unknown 10.0
1815 Male, age 53, unknown 9.5
2224 Female, age 72, unknown 8.6
2316 Male, age 76, right hemisphere 8.5
Red nucleus
nTPM: 11.8
1904 Male, age 53, unknown 15.5
1821 Female, age 72, unknown 13.5
2823 Male, age 76, right hemisphere 11.9
2227 Male, age 72, unknown 11.8
1954 Female, age 42, unknown 11.7
2588 Male, age 74, left hemisphere 11.7
2503 Female, age 72, unknown 11.5
1865 Male, age 51, unknown 11.4
2584 Male, age 75, left hemisphere 11.1
2785 Male, age 18, unknown 10.9
2725 Female, age 75, unknown 10.8
2769 Male, age 72, unknown 9.7
Substantia nigra
nTPM: 10.6
2409 Female, age 72, unknown 12.2
2590 Female, age 75, unknown 11.5
2665 Male, age 74, both hemispheres 11.5
2699 Male, age 18, unknown 11.3
1851 Male, age 51, unknown 10.6
1889 Female, age 72, unknown 10.6
1916 Female, age 42, unknown 10.6
2241 Male, age 72, unknown 10.1
2583 Male, age 75, right hemisphere 9.9
1941 Male, age 53, unknown 7.8
Superior colliculus
nTPM: 10.7
1913 Female, age 42, unknown 12.7
1895 Male, age 76, right hemisphere 11.6
2664 Male, age 75, both hemispheres 11.6
1796 Male, age 53, unknown 11.4
1995 Male, age 72, unknown 10.8
2587 Male, age 74, left hemisphere 10.3
1839 Male, age 51, unknown 10.0
2087 Female, age 72, unknown 9.8
2668 Female, age 75, unknown 9.7
2261 Male, age 18, unknown 9.3
Ventral tegmental area
nTPM: 10.7
2410 Female, age 72, unknown 11.8
1915 Female, age 42, unknown 11.6
2021 Male, age 53, unknown 10.9
2218 Male, age 76, both hemispheres 10.7
1942 Male, age 51, unknown 10.2
2223 Female, age 72, unknown 8.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 139

Max nTPM: 40.6
Min nTPM: 12.5
Std nTPM: 4.9
Median nTPM: 21.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 30.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 29.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 29.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 28.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

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The Human Protein Atlas

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