ABOUTMENU
HELP
NEWS
NIPAL3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.6 nTPM
HPA:58.6 nTPM
GTEx:60.1 nTPM
FANTOM5:91.8 Scaled Tags Per Million
Pig:69.0 nTPM
Mouse:47.7 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
2411 Female, age 72, unknown 69.9
2219 Male, age 76, both hemispheres 63.8
1833 Male, age 53, unknown 59.6
1870 Female, age 42, unknown 57.7
1830 Male, age 51, unknown 57.0
2586 Male, age 75, left hemisphere 56.9
2019 Male, age 18, unknown 56.3
1827 Male, age 72, unknown 55.0
2828 Female, age 72, unknown 52.1
2666 Male, age 74, left hemisphere 50.7
Dorsal raphe nucleus
nTPM: 46.6
2750 Male, age 76, both hemispheres 58.0
1828 Male, age 53, unknown 48.9
2016 Female, age 72, unknown 42.9
2298 Female, age 72, unknown 42.3
2047 Male, age 72, unknown 41.1
Inferior colliculus
nTPM: 45.5
2097 Female, age 72, unknown 48.8
1890 Male, age 53, unknown 46.7
1848 Female, age 42, unknown 46.6
2849 Male, age 72, unknown 39.8
Median raphe nucleus
nTPM: 44.7
2220 Male, age 76, midline 44.7
Pedunculopontine tegmental nucleus
nTPM: 51.6
2334 Male, age 80, both hemispheres 55.0
1921 Female, age 85, both hemispheres 54.6
2338 Male, age 61, both hemispheres 45.2
Periaquaductal grey, anterior
nTPM: 48.5
1947 Male, age 18, unknown 53.7
2502 Female, age 75, unknown 46.8
1795 Male, age 51, unknown 45.0
Periaquaductal grey, dorsal
nTPM: 39.0
2464 Female, age 72, unknown 48.7
1831 Male, age 72, unknown 46.0
1840 Male, age 53, unknown 33.2
2850 Male, age 76, both hemispheres 28.1
Periaquaductal grey, lateral
nTPM: 39.3
2053 Male, age 18, unknown 47.3
2272 Male, age 74, both hemispheres 41.4
2140 Male, age 76, both hemispheres 29.2
Pretectal area
nTPM: 49.4
1815 Male, age 53, unknown 58.1
2007 Male, age 72, unknown 57.7
2407 Male, age 75, both hemispheres 56.8
1816 Male, age 51, unknown 53.8
1817 Female, age 42, unknown 52.7
1944 Female, age 72, unknown 52.1
2316 Male, age 76, right hemisphere 46.5
2825 Male, age 18, unknown 43.7
2667 Female, age 75, unknown 42.1
2224 Female, age 72, unknown 41.4
2273 Male, age 74, both hemispheres 38.5
Red nucleus
nTPM: 58.6
1821 Female, age 72, unknown 63.6
1865 Male, age 51, unknown 63.6
1904 Male, age 53, unknown 62.5
2588 Male, age 74, left hemisphere 61.1
2503 Female, age 72, unknown 60.9
1954 Female, age 42, unknown 59.4
2785 Male, age 18, unknown 58.2
2823 Male, age 76, right hemisphere 57.5
2227 Male, age 72, unknown 55.3
2769 Male, age 72, unknown 54.8
2725 Female, age 75, unknown 54.1
2584 Male, age 75, left hemisphere 52.5
Substantia nigra
nTPM: 51.5
2590 Female, age 75, unknown 59.3
2583 Male, age 75, right hemisphere 58.3
2409 Female, age 72, unknown 55.6
1889 Female, age 72, unknown 54.6
1851 Male, age 51, unknown 53.7
2241 Male, age 72, unknown 52.8
1941 Male, age 53, unknown 51.1
1916 Female, age 42, unknown 45.5
2665 Male, age 74, both hemispheres 44.3
2699 Male, age 18, unknown 40.0
Superior colliculus
nTPM: 54.2
2668 Female, age 75, unknown 60.5
1913 Female, age 42, unknown 60.4
1895 Male, age 76, right hemisphere 58.2
2261 Male, age 18, unknown 58.2
1995 Male, age 72, unknown 55.2
2587 Male, age 74, left hemisphere 54.3
1796 Male, age 53, unknown 50.1
2087 Female, age 72, unknown 50.0
1839 Male, age 51, unknown 47.5
2664 Male, age 75, both hemispheres 47.2
Ventral tegmental area
nTPM: 49.5
2410 Female, age 72, unknown 63.1
1915 Female, age 42, unknown 48.5
1942 Male, age 51, unknown 48.2
2218 Male, age 76, both hemispheres 47.9
2223 Female, age 72, unknown 46.8
2021 Male, age 53, unknown 42.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.1
Samples: 139

Max nTPM: 221.7
Min nTPM: 25.0
Std nTPM: 25.5
Median nTPM: 54.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 221.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 147.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 112.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 111.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 111.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 108.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 107.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 101.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 100.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 97.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.8
FF:10158-103A5 76 years, female 91.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.0
Pig sample Sample description nTPM
Midbrain
nTPM: 69.0
Samples: 4

Max nTPM: 88.8
Min nTPM: 50.8
Sample A Female 88.8
Sample B Female 50.8
Sample C Male 82.2
Sample D Male 54.1
Periaqueductal gray
nTPM: 48.5
Samples: 3

Max nTPM: 53.1
Min nTPM: 44.2
Sample B Female 48.3
Sample C Male 53.1
Sample D Male 44.2
Substantia nigra
nTPM: 67.0
Samples: 4

Max nTPM: 82.9
Min nTPM: 53.5
Sample A Female 75.5
Sample B Female 53.5
Sample C Male 82.9
Sample D Male 56.1
Superior colliculi
nTPM: 54.5
Samples: 4

Max nTPM: 63.2
Min nTPM: 40.8
Sample A Female 53.7
Sample B Female 40.8
Sample C Male 63.2
Sample D Male 60.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.7
Samples: 4

Max nTPM: 50.0
Min nTPM: 45.0
Sample A Male 45.0
Sample B Male 47.2
Sample C Female 48.7
Sample D Female 50.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
70436746 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 7.0
69028282 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 4.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.