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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:31.5 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:28.3 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA061463
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.2
1854 Male, age 80, left hemisphere 33.7
1857 Female, age 85, left hemisphere 33.5
2290 Female, age 72, unknown 33.5
2288 Male, age 75, left hemisphere 33.4
1781 Male, age 74, unknown 33.3
2481 Female, age 94, left hemisphere 33.0
2289 Male, age 61, right hemisphere 32.6
2846 Female, age 79, unknown 32.3
Claustrum
nTPM: 34.5
2491 Male, age 75, both hemispheres 37.1
2392 Female, age 94, both hemispheres 35.8
2645 Female, age 72, unknown 35.0
2568 Male, age 61, both hemispheres 34.6
2292 Female, age 85, both hemispheres 34.5
1956 Male, age 74, unknown 33.9
2196 Female, age 79, unknown 33.4
2198 Male, age 80, both hemispheres 33.3
2284 Female, age 91, both hemispheres 33.1
Globus pallidus, externus
nTPM: 37.8
2567 Female, age 72, unknown 39.7
2395 Male, age 75, both hemispheres 38.2
2646 Male, age 61, right hemisphere 37.5
2772 Female, age 79, unknown 37.2
1996 Male, age 80, right hemisphere 36.3
Globus pallidus, internus
nTPM: 37.7
2483 Female, age 94, right hemisphere 40.8
2287 Male, age 75, right hemisphere 38.5
2111 Female, age 85, right hemisphere 38.4
1818 Male, age 74, unknown 37.6
2566 Female, age 72, unknown 36.9
2778 Female, age 91, both hemispheres 36.9
2037 Male, age 80, right hemisphere 35.1
Nucleus accumbens
nTPM: 34.0
2732 Male, age 80, right hemisphere 35.6
2824 Male, age 61, right hemisphere 34.9
1783 Male, age 74, unknown 34.6
2391 Female, age 94, left hemisphere 33.9
2286 Male, age 75, left hemisphere 33.8
1806 Female, age 85, left hemisphere 33.3
1856 Female, age 91, right hemisphere 33.0
2698 Female, age 72, unknown 32.8
Nucleus basalis of Meynert
nTPM: 34.9
2569 Male, age 61, both hemispheres 37.9
2393 Male, age 80, right hemisphere 34.4
2484 Female, age 94, left hemisphere 34.4
2821 Male, age 75, both hemispheres 33.0
Nucleus of the diagonal band
nTPM: 33.4
1812 Female, age 91, both hemispheres 34.1
2775 Male, age 80, right hemisphere 33.9
2029 Male, age 61, right hemisphere 33.3
2195 Female, age 85, both hemispheres 33.2
1979 Male, age 74, unknown 32.7
Olfactory tubercle
nTPM: 34.1
1998 Female, age 91, both hemispheres 35.5
2487 Female, age 94, left hemisphere 34.1
1846 Male, age 80, right hemisphere 33.5
2856 Male, age 75, right hemisphere 33.1
Putamen
nTPM: 34.3
2647 Male, age 75, left hemisphere 36.0
2466 Female, age 79, unknown 35.0
1838 Male, age 80, right hemisphere 34.7
2489 Female, age 72, unknown 34.3
2482 Female, age 94, left hemisphere 34.1
1829 Male, age 74, unknown 33.3
1937 Female, age 91, right hemisphere 33.0
Septal nuclei
nTPM: 34.1
2031 Female, age 72, unknown 35.6
2059 Female, age 85, both hemispheres 34.7
2394 Male, age 61, left hemisphere 34.7
2009 Female, age 91, both hemispheres 34.4
2199 Male, age 80, right hemisphere 33.7
1960 Male, age 74, unknown 33.0
2629 Female, age 94, right hemisphere 32.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.2
Samples: 246

Max nTPM: 55.4
Min nTPM: 8.7
Std nTPM: 7.6
Median nTPM: 25.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 55.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 53.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 51.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 48.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 47.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 45.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 44.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 44.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 44.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 43.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.3
Samples: 246

Max nTPM: 68.5
Min nTPM: 10.3
Std nTPM: 8.9
Median nTPM: 25.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 68.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 60.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 59.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 50.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 50.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 50.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 49.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 48.5
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 47.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 44.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 44.3
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Brain - Putamen (basal ganglia)
Average nTPM: 31.5
Samples: 205

Max nTPM: 72.1
Min nTPM: 14.0
Std nTPM: 8.2
Median nTPM: 31.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 72.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 56.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 53.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 53.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 51.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 50.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 48.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 47.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 47.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 47.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 47.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.7
FF:10164-103B2 76 years, female 50.7
Globus pallidus
Scaled Tags Per Million: 43.0
FF:10161-103A8 76 years, female 47.5
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 40.5
FF:10037-101F1 23-56 years, mixed 40.5
Putamen
Scaled Tags Per Million: 39.0
FF:10176-103C5 60 years, female 39.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.6
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 4.3
Sample C Male 4.6
Sample D Male 3.9
Putamen
nTPM: 4.4
Samples: 4

Max nTPM: 4.7
Min nTPM: 4.2
Sample A Female 4.4
Sample B Female 4.2
Sample C Male 4.4
Sample D Male 4.7
Septum
nTPM: 4.6
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.2
Sample A Female 4.5
Sample B Female 4.7
Sample C Male 4.2
Sample D Male 5.0
Ventral pallidum
nTPM: 4.4
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 4.7
Sample C Male 4.5
Sample D Male 4.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.3
Samples: 4

Max nTPM: 30.2
Min nTPM: 26.1
Sample A Male 30.2
Sample B Male 28.6
Sample C Female 28.2
Sample D Female 26.1
Septum
nTPM: 25.2
Samples: 4

Max nTPM: 27.7
Min nTPM: 22.9
Sample A Male 23.6
Sample B Male 22.9
Sample C Female 26.4
Sample D Female 27.7
Ventral forebrain
nTPM: 26.1
Samples: 4

Max nTPM: 27.7
Min nTPM: 24.7
Sample A Male 24.7
Sample B Male 27.7
Sample C Female 25.8
Sample D Female 26.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
74822880 Antisense, RP_051130_02_E10, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 1.4
74822880 Antisense, RP_051130_02_E10, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.