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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.7 nTPM
HPA:92.7 nTPM
GTEx:120.3 nTPM
FANTOM5:17.7 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:32.8 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.3
2586 Male, age 75, left hemisphere 105.2
2828 Female, age 72, unknown 94.4
2219 Male, age 76, both hemispheres 91.0
2019 Male, age 18, unknown 90.1
1827 Male, age 72, unknown 89.8
1870 Female, age 42, unknown 85.7
2411 Female, age 72, unknown 84.8
1833 Male, age 53, unknown 84.7
2666 Male, age 74, left hemisphere 84.6
1830 Male, age 51, unknown 82.6
Dorsal raphe nucleus
nTPM: 87.4
2298 Female, age 72, unknown 90.5
2047 Male, age 72, unknown 90.0
2750 Male, age 76, both hemispheres 88.3
1828 Male, age 53, unknown 84.6
2016 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 83.4
2097 Female, age 72, unknown 86.5
1890 Male, age 53, unknown 84.8
1848 Female, age 42, unknown 83.2
2849 Male, age 72, unknown 79.0
Median raphe nucleus
nTPM: 88.1
2220 Male, age 76, midline 88.1
Pedunculopontine tegmental nucleus
nTPM: 84.0
1921 Female, age 85, both hemispheres 85.2
2334 Male, age 80, both hemispheres 84.8
2338 Male, age 61, both hemispheres 82.1
Periaquaductal grey, anterior
nTPM: 92.7
1795 Male, age 51, unknown 95.2
2502 Female, age 75, unknown 94.5
1947 Male, age 18, unknown 88.5
Periaquaductal grey, dorsal
nTPM: 84.7
1840 Male, age 53, unknown 86.6
2464 Female, age 72, unknown 85.5
1831 Male, age 72, unknown 84.1
2850 Male, age 76, both hemispheres 82.4
Periaquaductal grey, lateral
nTPM: 84.4
2272 Male, age 74, both hemispheres 87.0
2053 Male, age 18, unknown 84.7
2140 Male, age 76, both hemispheres 81.4
Pretectal area
nTPM: 89.5
1816 Male, age 51, unknown 100.0
1944 Female, age 72, unknown 95.4
2007 Male, age 72, unknown 95.0
1817 Female, age 42, unknown 92.3
1815 Male, age 53, unknown 91.8
2273 Male, age 74, both hemispheres 88.2
2667 Female, age 75, unknown 87.4
2407 Male, age 75, both hemispheres 86.7
2825 Male, age 18, unknown 83.6
2224 Female, age 72, unknown 83.5
2316 Male, age 76, right hemisphere 80.4
Red nucleus
nTPM: 88.6
2588 Male, age 74, left hemisphere 91.6
1904 Male, age 53, unknown 90.8
2769 Male, age 72, unknown 90.7
2785 Male, age 18, unknown 90.4
2503 Female, age 72, unknown 89.1
2227 Male, age 72, unknown 89.0
1865 Male, age 51, unknown 88.5
2725 Female, age 75, unknown 88.4
1954 Female, age 42, unknown 87.4
2584 Male, age 75, left hemisphere 86.6
1821 Female, age 72, unknown 86.4
2823 Male, age 76, right hemisphere 84.7
Substantia nigra
nTPM: 92.6
1916 Female, age 42, unknown 103.6
1851 Male, age 51, unknown 97.8
1889 Female, age 72, unknown 94.3
2665 Male, age 74, both hemispheres 92.9
2699 Male, age 18, unknown 91.6
2583 Male, age 75, right hemisphere 91.3
1941 Male, age 53, unknown 90.6
2409 Female, age 72, unknown 89.9
2590 Female, age 75, unknown 89.0
2241 Male, age 72, unknown 85.3
Superior colliculus
nTPM: 90.6
2261 Male, age 18, unknown 97.9
2087 Female, age 72, unknown 97.6
2664 Male, age 75, both hemispheres 95.8
1796 Male, age 53, unknown 94.6
2668 Female, age 75, unknown 93.5
1995 Male, age 72, unknown 91.6
1913 Female, age 42, unknown 88.1
2587 Male, age 74, left hemisphere 84.5
1839 Male, age 51, unknown 81.8
1895 Male, age 76, right hemisphere 80.2
Ventral tegmental area
nTPM: 90.7
1915 Female, age 42, unknown 93.9
2410 Female, age 72, unknown 92.4
2218 Male, age 76, both hemispheres 90.8
1942 Male, age 51, unknown 90.3
2223 Female, age 72, unknown 90.3
2021 Male, age 53, unknown 86.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 120.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.3
Samples: 139

Max nTPM: 259.6
Min nTPM: 45.3
Std nTPM: 34.2
Median nTPM: 115.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 259.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 203.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 194.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 192.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 187.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 184.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 181.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 181.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 180.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 177.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 176.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.7
FF:10158-103A5 76 years, female 17.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 18.3
Sample A Female 30.7
Sample B Female 21.5
Sample C Male 21.8
Sample D Male 18.3
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 22.4
Min nTPM: 16.2
Sample B Female 17.9
Sample C Male 22.4
Sample D Male 16.2
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 27.2
Min nTPM: 17.5
Sample A Female 27.2
Sample B Female 21.5
Sample C Male 23.5
Sample D Male 17.5
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.3
Sample A Female 24.6
Sample B Female 25.8
Sample C Male 20.9
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 29.1
Sample A Male 36.8
Sample B Male 29.2
Sample C Female 29.1
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
74881790 Antisense, RP_060315_04_D03, Mouse strain C57BL/6J (56 days, male) 2.3
69528052 Antisense, RP_050421_03_A05, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.