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DBNDD1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.3 nTPM
HPA:55.3 nTPM
GTEx:43.2 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:35.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.9
2019 Male, age 18, unknown 57.2
2828 Female, age 72, unknown 46.1
2586 Male, age 75, left hemisphere 41.4
2666 Male, age 74, left hemisphere 37.0
2219 Male, age 76, both hemispheres 36.2
1827 Male, age 72, unknown 34.1
2411 Female, age 72, unknown 25.1
1870 Female, age 42, unknown 25.0
1833 Male, age 53, unknown 24.1
1830 Male, age 51, unknown 22.9
Dorsal raphe nucleus
nTPM: 23.7
2750 Male, age 76, both hemispheres 27.8
2298 Female, age 72, unknown 24.8
2047 Male, age 72, unknown 23.6
1828 Male, age 53, unknown 23.2
2016 Female, age 72, unknown 18.8
Inferior colliculus
nTPM: 27.2
1890 Male, age 53, unknown 30.5
2097 Female, age 72, unknown 28.8
1848 Female, age 42, unknown 26.7
2849 Male, age 72, unknown 22.5
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Pedunculopontine tegmental nucleus
nTPM: 27.7
2334 Male, age 80, both hemispheres 31.8
1921 Female, age 85, both hemispheres 29.7
2338 Male, age 61, both hemispheres 21.5
Periaquaductal grey, anterior
nTPM: 36.7
1795 Male, age 51, unknown 47.6
2502 Female, age 75, unknown 33.2
1947 Male, age 18, unknown 29.4
Periaquaductal grey, dorsal
nTPM: 26.8
1831 Male, age 72, unknown 33.6
1840 Male, age 53, unknown 24.8
2464 Female, age 72, unknown 24.7
2850 Male, age 76, both hemispheres 24.3
Periaquaductal grey, lateral
nTPM: 23.1
2053 Male, age 18, unknown 24.0
2140 Male, age 76, both hemispheres 23.8
2272 Male, age 74, both hemispheres 21.5
Pretectal area
nTPM: 55.3
1944 Female, age 72, unknown 103.8
1816 Male, age 51, unknown 97.0
1817 Female, age 42, unknown 88.2
2007 Male, age 72, unknown 88.1
1815 Male, age 53, unknown 73.8
2667 Female, age 75, unknown 40.8
2407 Male, age 75, both hemispheres 25.0
2273 Male, age 74, both hemispheres 24.9
2224 Female, age 72, unknown 23.1
2825 Male, age 18, unknown 22.8
2316 Male, age 76, right hemisphere 20.8
Red nucleus
nTPM: 30.2
2785 Male, age 18, unknown 57.3
2588 Male, age 74, left hemisphere 36.2
2725 Female, age 75, unknown 31.8
2584 Male, age 75, left hemisphere 30.4
2503 Female, age 72, unknown 28.1
2823 Male, age 76, right hemisphere 27.9
1954 Female, age 42, unknown 27.5
1821 Female, age 72, unknown 25.3
1865 Male, age 51, unknown 25.1
1904 Male, age 53, unknown 25.0
2769 Male, age 72, unknown 24.2
2227 Male, age 72, unknown 23.8
Substantia nigra
nTPM: 39.9
1889 Female, age 72, unknown 69.2
2665 Male, age 74, both hemispheres 55.9
1916 Female, age 42, unknown 46.3
1941 Male, age 53, unknown 45.9
1851 Male, age 51, unknown 38.0
2583 Male, age 75, right hemisphere 35.7
2590 Female, age 75, unknown 29.7
2409 Female, age 72, unknown 28.3
2241 Male, age 72, unknown 24.9
2699 Male, age 18, unknown 24.6
Superior colliculus
nTPM: 42.1
2087 Female, age 72, unknown 86.5
2668 Female, age 75, unknown 52.5
1913 Female, age 42, unknown 43.1
1995 Male, age 72, unknown 43.0
2261 Male, age 18, unknown 41.8
1796 Male, age 53, unknown 37.7
2664 Male, age 75, both hemispheres 37.0
1895 Male, age 76, right hemisphere 29.7
2587 Male, age 74, left hemisphere 25.2
1839 Male, age 51, unknown 25.0
Ventral tegmental area
nTPM: 29.6
2218 Male, age 76, both hemispheres 38.4
2410 Female, age 72, unknown 36.8
1915 Female, age 42, unknown 30.2
1942 Male, age 51, unknown 28.2
2021 Male, age 53, unknown 23.5
2223 Female, age 72, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.2
Samples: 139

Max nTPM: 120.0
Min nTPM: 10.0
Std nTPM: 22.4
Median nTPM: 38.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 120.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 104.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 102.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 98.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 91.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 86.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 86.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 85.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 85.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 82.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 80.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 23.5
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 7.2
Sample C Male 23.5
Sample D Male 9.1
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 8.0
Min nTPM: 5.4
Sample B Female 6.4
Sample C Male 8.0
Sample D Male 5.4
Substantia nigra
nTPM: 7.1
Samples: 4

Max nTPM: 10.6
Min nTPM: 2.9
Sample A Female 10.6
Sample B Female 5.5
Sample C Male 9.5
Sample D Male 2.9
Superior colliculi
nTPM: 12.4
Samples: 4

Max nTPM: 20.2
Min nTPM: 9.1
Sample A Female 9.5
Sample B Female 9.1
Sample C Male 20.2
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 36.8
Min nTPM: 33.4
Sample A Male 36.8
Sample B Male 33.4
Sample C Female 35.1
Sample D Female 35.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68745251 Antisense, RP_050210_01_E10, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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