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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:40.9 nTPM
HPA:40.9 nTPM
GTEx:21.4 nTPM
FANTOM5:78.2 Scaled Tags Per Million
Pig:14.5 nTPM
Mouse:6.6 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019044Antibody CAB022157Antibody CAB025216
Glial cells Not detectedMediumMedium
Neuronal cells Not detectedHighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.1
1854 Male, age 80, left hemisphere 38.8
1857 Female, age 85, left hemisphere 33.4
2846 Female, age 79, unknown 33.2
2289 Male, age 61, right hemisphere 33.0
2290 Female, age 72, unknown 31.6
2481 Female, age 94, left hemisphere 31.1
1781 Male, age 74, unknown 30.9
2288 Male, age 75, left hemisphere 24.4
Claustrum
nTPM: 29.2
2292 Female, age 85, both hemispheres 40.7
2196 Female, age 79, unknown 31.8
2645 Female, age 72, unknown 30.0
2392 Female, age 94, both hemispheres 28.4
2568 Male, age 61, both hemispheres 27.5
1956 Male, age 74, unknown 27.1
2284 Female, age 91, both hemispheres 26.9
2198 Male, age 80, both hemispheres 25.7
2491 Male, age 75, both hemispheres 25.0
Globus pallidus, externus
nTPM: 39.1
2567 Female, age 72, unknown 49.1
2646 Male, age 61, right hemisphere 44.7
1996 Male, age 80, right hemisphere 34.6
2395 Male, age 75, both hemispheres 34.4
2772 Female, age 79, unknown 32.9
Globus pallidus, internus
nTPM: 39.5
2111 Female, age 85, right hemisphere 47.2
2566 Female, age 72, unknown 45.2
2778 Female, age 91, both hemispheres 42.1
2037 Male, age 80, right hemisphere 39.8
2483 Female, age 94, right hemisphere 38.8
1818 Male, age 74, unknown 36.0
2287 Male, age 75, right hemisphere 27.2
Nucleus accumbens
nTPM: 35.7
2391 Female, age 94, left hemisphere 40.4
2824 Male, age 61, right hemisphere 39.7
2732 Male, age 80, right hemisphere 37.4
1856 Female, age 91, right hemisphere 36.7
1806 Female, age 85, left hemisphere 35.7
2698 Female, age 72, unknown 34.2
1783 Male, age 74, unknown 33.8
2286 Male, age 75, left hemisphere 27.3
Nucleus basalis of Meynert
nTPM: 40.9
2569 Male, age 61, both hemispheres 46.5
2393 Male, age 80, right hemisphere 41.7
2484 Female, age 94, left hemisphere 38.1
2821 Male, age 75, both hemispheres 37.3
Nucleus of the diagonal band
nTPM: 24.9
2195 Female, age 85, both hemispheres 30.6
1979 Male, age 74, unknown 27.7
2775 Male, age 80, right hemisphere 25.4
1812 Female, age 91, both hemispheres 21.2
2029 Male, age 61, right hemisphere 19.6
Olfactory tubercle
nTPM: 26.5
1846 Male, age 80, right hemisphere 28.2
1998 Female, age 91, both hemispheres 26.5
2856 Male, age 75, right hemisphere 25.8
2487 Female, age 94, left hemisphere 25.4
Putamen
nTPM: 36.7
2489 Female, age 72, unknown 42.3
1838 Male, age 80, right hemisphere 40.8
1937 Female, age 91, right hemisphere 38.5
2647 Male, age 75, left hemisphere 36.1
2482 Female, age 94, left hemisphere 34.6
2466 Female, age 79, unknown 33.0
1829 Male, age 74, unknown 31.3
Septal nuclei
nTPM: 27.7
2059 Female, age 85, both hemispheres 32.6
2394 Male, age 61, left hemisphere 32.4
2199 Male, age 80, right hemisphere 32.0
1960 Male, age 74, unknown 28.9
2009 Female, age 91, both hemispheres 25.0
2031 Female, age 72, unknown 22.0
2629 Female, age 94, right hemisphere 21.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.0
Samples: 246

Max nTPM: 57.8
Min nTPM: 5.5
Std nTPM: 6.7
Median nTPM: 18.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 57.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 42.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 39.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 38.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 37.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 35.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 35.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 34.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 34.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 33.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 32.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 81.4
Min nTPM: 7.8
Std nTPM: 9.5
Median nTPM: 19.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 81.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 69.7
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 55.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 55.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 55.6
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 54.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 50.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 43.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 42.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 42.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 41.2
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Brain - Putamen (basal ganglia)
Average nTPM: 20.7
Samples: 205

Max nTPM: 76.6
Min nTPM: 8.7
Std nTPM: 8.2
Median nTPM: 18.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 76.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 71.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 47.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 47.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 42.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 39.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 37.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 37.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 35.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 35.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 33.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.2
FF:10164-103B2 76 years, female 78.2
Globus pallidus
Scaled Tags Per Million: 69.5
FF:10175-103C4 60 years, female 74.2
FF:10161-103A8 76 years, female 64.8
Nucleus accumbens
Scaled Tags Per Million: 43.5
FF:10037-101F1 23-56 years, mixed 43.5
Putamen
Scaled Tags Per Million: 77.0
FF:10176-103C5 60 years, female 77.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.5
Pig sample Sample description nTPM
Caudate
nTPM: 13.1
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.9
Sample A Female 13.9
Sample B Female 13.6
Sample C Male 10.9
Sample D Male 14.1
Putamen
nTPM: 13.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 11.7
Sample A Female 17.4
Sample B Female 13.0
Sample C Male 12.4
Sample D Male 11.7
Septum
nTPM: 14.5
Samples: 4

Max nTPM: 15.2
Min nTPM: 14.0
Sample A Female 14.6
Sample B Female 14.0
Sample C Male 14.2
Sample D Male 15.2
Ventral pallidum
nTPM: 13.3
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.8
Sample A Female 13.7
Sample B Female 14.1
Sample C Male 11.8
Sample D Male 13.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.6
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.2
Sample A Male 6.5
Sample B Male 5.2
Sample C Female 7.5
Sample D Female 7.3
Septum
nTPM: 6.5
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 6.3
Sample C Female 7.0
Sample D Female 6.3
Ventral forebrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.2
Sample A Male 7.4
Sample B Male 6.5
Sample C Female 6.2
Sample D Female 6.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68545348 Antisense, RP_050118_03_C07, Mouse strain C57BL/6J (56 days, male) 0.3
71212494 Antisense, RP_050816_03_D03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
68545348 Antisense, RP_050118_03_C07, Mouse strain C57BL/6J (56 days, male) 0.2
71212494 Antisense, RP_050816_03_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.