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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:12.6 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:14.5 nTPM
Mouse:6.1 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.4
2289 Male, age 61, right hemisphere 5.8
1857 Female, age 85, left hemisphere 3.8
2290 Female, age 72, unknown 3.6
1854 Male, age 80, left hemisphere 3.5
2846 Female, age 79, unknown 3.4
1781 Male, age 74, unknown 2.8
2481 Female, age 94, left hemisphere 2.4
2288 Male, age 75, left hemisphere 2.3
Claustrum
nTPM: 2.0
2196 Female, age 79, unknown 3.3
2198 Male, age 80, both hemispheres 2.0
2645 Female, age 72, unknown 2.0
2392 Female, age 94, both hemispheres 1.9
2491 Male, age 75, both hemispheres 1.9
1956 Male, age 74, unknown 1.8
2284 Female, age 91, both hemispheres 1.8
2292 Female, age 85, both hemispheres 1.8
2568 Male, age 61, both hemispheres 1.8
Globus pallidus, externus
nTPM: 2.0
2395 Male, age 75, both hemispheres 2.3
2646 Male, age 61, right hemisphere 2.1
2772 Female, age 79, unknown 2.0
1996 Male, age 80, right hemisphere 1.8
2567 Female, age 72, unknown 1.8
Globus pallidus, internus
nTPM: 1.9
2483 Female, age 94, right hemisphere 2.3
2111 Female, age 85, right hemisphere 2.0
2566 Female, age 72, unknown 2.0
2037 Male, age 80, right hemisphere 1.9
1818 Male, age 74, unknown 1.8
2287 Male, age 75, right hemisphere 1.8
2778 Female, age 91, both hemispheres 1.8
Nucleus accumbens
nTPM: 5.0
2732 Male, age 80, right hemisphere 12.2
1783 Male, age 74, unknown 5.2
1856 Female, age 91, right hemisphere 4.9
2824 Male, age 61, right hemisphere 4.9
1806 Female, age 85, left hemisphere 4.4
2698 Female, age 72, unknown 3.6
2286 Male, age 75, left hemisphere 2.5
2391 Female, age 94, left hemisphere 2.1
Nucleus basalis of Meynert
nTPM: 2.2
2393 Male, age 80, right hemisphere 2.8
2484 Female, age 94, left hemisphere 2.3
2569 Male, age 61, both hemispheres 2.0
2821 Male, age 75, both hemispheres 2.0
Nucleus of the diagonal band
nTPM: 3.2
1979 Male, age 74, unknown 7.0
1812 Female, age 91, both hemispheres 3.0
2775 Male, age 80, right hemisphere 2.2
2195 Female, age 85, both hemispheres 2.1
2029 Male, age 61, right hemisphere 1.7
Olfactory tubercle
nTPM: 2.1
1846 Male, age 80, right hemisphere 2.5
2487 Female, age 94, left hemisphere 2.3
1998 Female, age 91, both hemispheres 1.9
2856 Male, age 75, right hemisphere 1.7
Putamen
nTPM: 3.0
2466 Female, age 79, unknown 3.8
1838 Male, age 80, right hemisphere 3.6
1937 Female, age 91, right hemisphere 3.3
2489 Female, age 72, unknown 2.9
1829 Male, age 74, unknown 2.7
2647 Male, age 75, left hemisphere 2.5
2482 Female, age 94, left hemisphere 2.1
Septal nuclei
nTPM: 4.9
2009 Female, age 91, both hemispheres 8.7
2199 Male, age 80, right hemisphere 8.2
2629 Female, age 94, right hemisphere 7.2
2394 Male, age 61, left hemisphere 2.8
1960 Male, age 74, unknown 2.5
2031 Female, age 72, unknown 2.4
2059 Female, age 85, both hemispheres 2.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.9
Samples: 246

Max nTPM: 121.5
Min nTPM: 0.5
Std nTPM: 16.5
Median nTPM: 5.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 121.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 98.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 81.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 71.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 70.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 67.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 60.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 57.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 43.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.6
Samples: 246

Max nTPM: 81.4
Min nTPM: 0.4
Std nTPM: 11.8
Median nTPM: 10.5
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 81.4
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 78.6
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 62.2
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 61.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 60.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 59.8
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 58.9
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 55.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 44.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 43.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 41.7
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Brain - Putamen (basal ganglia)
Average nTPM: 3.0
Samples: 205

Max nTPM: 12.9
Min nTPM: 0.2
Std nTPM: 2.0
Median nTPM: 2.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 12.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 11.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 8.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 8.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 8.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 7.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 7.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 7.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 7.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 7.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 6.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.0
FF:10164-103B2 76 years, female 13.0
Globus pallidus
Scaled Tags Per Million: 0.4
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.1
Nucleus accumbens
Scaled Tags Per Million: 2.9
FF:10037-101F1 23-56 years, mixed 2.9
Putamen
Scaled Tags Per Million: 10.1
FF:10176-103C5 60 years, female 10.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.5
Pig sample Sample description nTPM
Caudate
nTPM: 14.5
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.0
Sample A Female 14.5
Sample B Female 15.4
Sample C Male 16.1
Sample D Male 12.0
Putamen
nTPM: 9.0
Samples: 4

Max nTPM: 12.0
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 8.7
Sample C Male 12.0
Sample D Male 8.6
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 20.6
Min nTPM: 9.9
Sample A Female 12.1
Sample B Female 9.9
Sample C Male 14.7
Sample D Male 20.6
Ventral pallidum
nTPM: 8.9
Samples: 4

Max nTPM: 10.7
Min nTPM: 7.1
Sample A Female 8.9
Sample B Female 7.1
Sample C Male 10.7
Sample D Male 8.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.1
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.4
Sample A Male 3.8
Sample B Male 3.6
Sample C Female 2.4
Sample D Female 2.5
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.2
Sample A Male 5.2
Sample B Male 6.2
Sample C Female 7.0
Sample D Female 6.0
Ventral forebrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.1
Sample A Male 1.9
Sample B Male 2.1
Sample C Female 1.1
Sample D Female 2.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
69114872 Antisense, RP_050317_02_C02, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.5
69114872 Antisense, RP_050317_02_C02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.