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GDE1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.7 nTPM
HPA:45.7 nTPM
GTEx:43.2 nTPM
FANTOM5:76.7 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:310.1 nTPM
Allen mouse:27.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.7
Sample id Sample description nTPM
Hippocampus
nTPM: 43.0
1855 Male, age 76, left hemisphere 44.9
1898 Male, age 80, left hemisphere 44.6
2621 Female, age 67, right hemisphere 43.5
2148 Female, age 91, left hemisphere 41.9
2529 Female, age 94, left hemisphere 41.6
1911 Female, age 85, right hemisphere 41.4
Dentate gyrus
nTPM: 43.4
2010 Male, age 76, both hemispheres 45.6
2530 Female, age 94, left hemisphere 45.5
2246 Female, age 85, both hemispheres 43.8
1927 Female, age 91, both hemispheres 43.4
2528 Male, age 74, both hemispheres 42.4
2531 Female, age 67, both hemispheres 39.5
Entorhinal gyrus
nTPM: 42.1
2117 Female, age 91, right hemisphere 43.9
2764 Male, age 80, right hemisphere 42.8
1938 Female, age 85, left hemisphere 42.7
1787 Male, age 76, left hemisphere 41.8
2613 Female, age 94, left hemisphere 41.7
2686 Male, age 75, right hemisphere 39.4
Hippocampus, CA1
nTPM: 45.7
2749 Male, age 80, left hemisphere 56.9
1873 Female, age 85, both hemispheres 44.5
2527 Male, age 74, both hemispheres 43.8
2045 Male, age 76, both hemispheres 42.8
2082 Female, age 91, right hemisphere 40.3
Hippocampus, CA2
nTPM: 44.0
1892 Male, age 76, both hemispheres 50.5
1963 Male, age 80, left hemisphere 50.1
2249 Male, age 74, both hemispheres 42.1
1940 Female, age 85, left hemisphere 41.8
2437 Female, age 94, left hemisphere 40.2
2113 Female, age 91, right hemisphere 39.5
Hippocampus, CA3
nTPM: 42.0
2137 Male, age 80, left hemisphere 49.5
1867 Male, age 76, both hemispheres 43.5
1891 Female, age 85, both hemispheres 40.6
2436 Male, age 74, both hemispheres 40.3
2620 Female, age 94, left hemisphere 39.8
2861 Female, age 67, both hemispheres 38.5
Parahippocampal cortex
nTPM: 40.9
2532 Female, age 72, left hemisphere 42.8
1933 Female, age 85, both hemispheres 42.6
2692 Male, age 74, both hemispheres 41.7
1850 Male, age 80, both hemispheres 41.6
2245 Female, age 91, both hemispheres 41.5
2693 Female, age 94, both hemispheres 41.2
2250 Female, age 67, right hemisphere 40.5
1990 Female, age 91, right hemisphere 40.3
2018 Male, age 76, both hemispheres 39.1
2622 Female, age 67, right hemisphere 37.9
Perirhinal gyrus
nTPM: 42.4
2521 Female, age 94, right hemisphere 46.0
1847 Female, age 91, left hemisphere 41.9
2848 Male, age 76, right hemisphere 41.6
1794 Male, age 80, right hemisphere 41.5
1841 Female, age 85, right hemisphere 40.7
Subiculum
nTPM: 42.9
1901 Male, age 80, both hemispheres 45.9
2438 Female, age 94, left hemisphere 45.3
2042 Male, age 76, both hemispheres 43.2
1977 Female, age 85, both hemispheres 42.7
2729 Female, age 91, right hemisphere 40.4
2619 Male, age 74, both hemispheres 40.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.2
Samples: 197

Max nTPM: 72.6
Min nTPM: 10.1
Std nTPM: 9.0
Median nTPM: 42.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 72.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 65.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 65.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 63.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 62.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 62.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 61.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 60.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 59.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 58.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 58.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 76.7
FF:10169-103B7 60 years, female 88.9
FF:10153-102I9 76 years, female 64.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 44.3
Samples: 4

Max nTPM: 58.6
Min nTPM: 33.1
Sample A Female 58.6
Sample B Female 49.9
Sample C Male 35.5
Sample D Male 33.1
Entorhinal cortex
nTPM: 31.8
Samples: 4

Max nTPM: 43.1
Min nTPM: 26.1
Sample A Female 30.8
Sample B Female 43.1
Sample C Male 27.1
Sample D Male 26.1
Subiculum
nTPM: 27.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 24.3
Sample A Female 31.4
Sample B Female 29.3
Sample C Male 24.3
Sample D Male 25.6
Ventral hippocampus
nTPM: 35.3
Samples: 4

Max nTPM: 40.7
Min nTPM: 28.6
Sample A Female 40.7
Sample B Female 28.6
Sample C Male 36.3
Sample D Male 35.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 310.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 307.0
Samples: 4

Max nTPM: 318.3
Min nTPM: 294.1
Sample A Male 298.9
Sample B Male 316.7
Sample C Female 294.1
Sample D Female 318.3
Hippocampal formation
nTPM: 310.2
Samples: 4

Max nTPM: 331.1
Min nTPM: 292.1
Sample A Male 324.4
Sample B Male 292.1
Sample C Female 331.1
Sample D Female 293.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 27.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 27.0
356858 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 27.0
68192994 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 24.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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