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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.5 nTPM
HPA:22.5 nTPM
GTEx:65.7 nTPM
FANTOM5:43.2 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:13.0 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.2
2411 Female, age 72, unknown 23.4
2586 Male, age 75, left hemisphere 23.3
1827 Male, age 72, unknown 21.1
2019 Male, age 18, unknown 20.0
1870 Female, age 42, unknown 18.8
2828 Female, age 72, unknown 18.0
1833 Male, age 53, unknown 14.9
2219 Male, age 76, both hemispheres 14.8
1830 Male, age 51, unknown 14.4
2666 Male, age 74, left hemisphere 13.8
Dorsal raphe nucleus
nTPM: 19.8
2298 Female, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 21.4
2047 Male, age 72, unknown 19.8
1828 Male, age 53, unknown 18.1
2016 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 18.6
2097 Female, age 72, unknown 22.2
1848 Female, age 42, unknown 18.8
1890 Male, age 53, unknown 17.4
2849 Male, age 72, unknown 15.9
Median raphe nucleus
nTPM: 20.9
2220 Male, age 76, midline 20.9
Pedunculopontine tegmental nucleus
nTPM: 17.5
2334 Male, age 80, both hemispheres 20.9
1921 Female, age 85, both hemispheres 17.9
2338 Male, age 61, both hemispheres 13.5
Periaquaductal grey, anterior
nTPM: 22.5
1795 Male, age 51, unknown 24.8
2502 Female, age 75, unknown 22.5
1947 Male, age 18, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 15.9
2464 Female, age 72, unknown 17.7
1840 Male, age 53, unknown 16.2
1831 Male, age 72, unknown 15.7
2850 Male, age 76, both hemispheres 13.7
Periaquaductal grey, lateral
nTPM: 17.0
2272 Male, age 74, both hemispheres 21.8
2140 Male, age 76, both hemispheres 14.7
2053 Male, age 18, unknown 14.4
Pretectal area
nTPM: 21.1
2007 Male, age 72, unknown 27.9
1816 Male, age 51, unknown 24.7
1817 Female, age 42, unknown 22.9
1944 Female, age 72, unknown 22.1
2667 Female, age 75, unknown 22.1
2273 Male, age 74, both hemispheres 21.5
2224 Female, age 72, unknown 20.7
1815 Male, age 53, unknown 19.7
2825 Male, age 18, unknown 17.8
2316 Male, age 76, right hemisphere 16.7
2407 Male, age 75, both hemispheres 15.9
Red nucleus
nTPM: 19.0
2503 Female, age 72, unknown 24.4
2785 Male, age 18, unknown 23.2
2227 Male, age 72, unknown 20.3
2769 Male, age 72, unknown 19.7
1821 Female, age 72, unknown 19.6
2725 Female, age 75, unknown 19.5
1904 Male, age 53, unknown 17.9
1954 Female, age 42, unknown 17.8
2584 Male, age 75, left hemisphere 17.8
2588 Male, age 74, left hemisphere 17.5
2823 Male, age 76, right hemisphere 15.6
1865 Male, age 51, unknown 14.9
Substantia nigra
nTPM: 17.2
1916 Female, age 42, unknown 23.1
1941 Male, age 53, unknown 21.4
1851 Male, age 51, unknown 20.6
1889 Female, age 72, unknown 19.6
2583 Male, age 75, right hemisphere 19.0
2699 Male, age 18, unknown 15.6
2590 Female, age 75, unknown 15.4
2665 Male, age 74, both hemispheres 14.8
2241 Male, age 72, unknown 12.4
2409 Female, age 72, unknown 9.8
Superior colliculus
nTPM: 18.5
1796 Male, age 53, unknown 23.4
2087 Female, age 72, unknown 22.0
2261 Male, age 18, unknown 21.5
2664 Male, age 75, both hemispheres 19.0
2668 Female, age 75, unknown 18.2
2587 Male, age 74, left hemisphere 17.5
1839 Male, age 51, unknown 17.0
1995 Male, age 72, unknown 15.9
1895 Male, age 76, right hemisphere 15.5
1913 Female, age 42, unknown 15.4
Ventral tegmental area
nTPM: 19.0
1915 Female, age 42, unknown 21.3
1942 Male, age 51, unknown 19.7
2218 Male, age 76, both hemispheres 19.7
2410 Female, age 72, unknown 18.5
2223 Female, age 72, unknown 17.6
2021 Male, age 53, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.7
Samples: 139

Max nTPM: 149.3
Min nTPM: 16.3
Std nTPM: 24.4
Median nTPM: 62.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 149.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 137.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 128.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 121.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 109.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 106.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 106.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 104.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 102.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 102.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.2
FF:10158-103A5 76 years, female 43.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.6
Samples: 4

Max nTPM: 48.0
Min nTPM: 40.7
Sample A Female 47.2
Sample B Female 46.5
Sample C Male 48.0
Sample D Male 40.7
Periaqueductal gray
nTPM: 33.3
Samples: 3

Max nTPM: 36.6
Min nTPM: 28.6
Sample B Female 34.6
Sample C Male 36.6
Sample D Male 28.6
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 64.1
Min nTPM: 29.0
Sample A Female 64.1
Sample B Female 40.4
Sample C Male 45.6
Sample D Male 29.0
Superior colliculi
nTPM: 44.3
Samples: 4

Max nTPM: 55.3
Min nTPM: 38.0
Sample A Female 55.3
Sample B Female 39.6
Sample C Male 44.3
Sample D Male 38.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 19.8
Min nTPM: 8.6
Sample A Male 19.8
Sample B Male 12.9
Sample C Female 8.6
Sample D Female 10.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
68744797 Antisense, RP_050208_01_F08, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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