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SPATA20
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA:28.0 nTPM
GTEx:22.6 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:0.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2586 Male, age 75, left hemisphere 28.2
2219 Male, age 76, both hemispheres 27.8
2828 Female, age 72, unknown 26.7
2411 Female, age 72, unknown 25.7
2019 Male, age 18, unknown 24.5
1827 Male, age 72, unknown 23.9
1870 Female, age 42, unknown 23.5
1830 Male, age 51, unknown 23.0
2666 Male, age 74, left hemisphere 22.7
1833 Male, age 53, unknown 22.6
Dorsal raphe nucleus
nTPM: 24.8
2298 Female, age 72, unknown 26.8
2047 Male, age 72, unknown 25.8
2750 Male, age 76, both hemispheres 25.2
1828 Male, age 53, unknown 24.1
2016 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 23.1
1890 Male, age 53, unknown 24.9
2097 Female, age 72, unknown 23.4
2849 Male, age 72, unknown 22.7
1848 Female, age 42, unknown 21.4
Median raphe nucleus
nTPM: 26.6
2220 Male, age 76, midline 26.6
Pedunculopontine tegmental nucleus
nTPM: 24.5
2338 Male, age 61, both hemispheres 25.5
1921 Female, age 85, both hemispheres 25.1
2334 Male, age 80, both hemispheres 23.1
Periaquaductal grey, anterior
nTPM: 27.9
1795 Male, age 51, unknown 29.2
1947 Male, age 18, unknown 28.6
2502 Female, age 75, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 25.0
2850 Male, age 76, both hemispheres 26.3
2464 Female, age 72, unknown 25.5
1840 Male, age 53, unknown 24.4
1831 Male, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 23.6
2272 Male, age 74, both hemispheres 24.2
2053 Male, age 18, unknown 23.5
2140 Male, age 76, both hemispheres 23.1
Pretectal area
nTPM: 27.6
1816 Male, age 51, unknown 34.7
1944 Female, age 72, unknown 31.6
2007 Male, age 72, unknown 30.3
1817 Female, age 42, unknown 30.2
1815 Male, age 53, unknown 29.9
2667 Female, age 75, unknown 27.9
2224 Female, age 72, unknown 26.7
2407 Male, age 75, both hemispheres 23.8
2316 Male, age 76, right hemisphere 23.3
2273 Male, age 74, both hemispheres 22.8
2825 Male, age 18, unknown 22.6
Red nucleus
nTPM: 23.7
2725 Female, age 75, unknown 25.8
2785 Male, age 18, unknown 25.7
1821 Female, age 72, unknown 24.5
2823 Male, age 76, right hemisphere 24.3
2503 Female, age 72, unknown 24.2
2769 Male, age 72, unknown 24.1
2588 Male, age 74, left hemisphere 23.9
1904 Male, age 53, unknown 23.2
2584 Male, age 75, left hemisphere 23.2
2227 Male, age 72, unknown 23.1
1865 Male, age 51, unknown 22.0
1954 Female, age 42, unknown 20.6
Substantia nigra
nTPM: 27.4
1916 Female, age 42, unknown 33.6
1851 Male, age 51, unknown 29.6
2409 Female, age 72, unknown 28.6
2590 Female, age 75, unknown 28.6
2665 Male, age 74, both hemispheres 28.0
1889 Female, age 72, unknown 26.6
1941 Male, age 53, unknown 26.0
2241 Male, age 72, unknown 25.6
2699 Male, age 18, unknown 25.2
2583 Male, age 75, right hemisphere 22.6
Superior colliculus
nTPM: 25.3
2087 Female, age 72, unknown 31.5
2261 Male, age 18, unknown 29.5
1796 Male, age 53, unknown 28.5
1913 Female, age 42, unknown 25.6
1995 Male, age 72, unknown 25.3
2664 Male, age 75, both hemispheres 24.5
2587 Male, age 74, left hemisphere 22.9
2668 Female, age 75, unknown 22.8
1895 Male, age 76, right hemisphere 22.3
1839 Male, age 51, unknown 20.4
Ventral tegmental area
nTPM: 28.0
2410 Female, age 72, unknown 30.4
2218 Male, age 76, both hemispheres 29.5
1942 Male, age 51, unknown 29.4
1915 Female, age 42, unknown 28.7
2021 Male, age 53, unknown 25.3
2223 Female, age 72, unknown 24.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 139

Max nTPM: 53.2
Min nTPM: 4.1
Std nTPM: 9.5
Median nTPM: 21.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 53.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 51.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 50.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 42.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 40.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 39.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 39.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 38.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 38.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 38.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 38.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.0
Sample A Female 7.2
Sample B Female 6.2
Sample C Male 8.9
Sample D Male 6.0
Periaqueductal gray
nTPM: 6.9
Samples: 3

Max nTPM: 7.6
Min nTPM: 5.7
Sample B Female 7.4
Sample C Male 7.6
Sample D Male 5.7
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 4.4
Sample A Female 8.9
Sample B Female 5.1
Sample C Male 6.3
Sample D Male 4.4
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.1
Sample A Female 7.9
Sample B Female 5.1
Sample C Male 8.4
Sample D Male 7.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69113787 Antisense, RP_050316_02_G07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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