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PAF1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:36.4 nTPM
HPA:36.4 nTPM
GTEx:45.7 nTPM
FANTOM5:82.5 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:38.1 nTPM
Allen mouse:26.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041875
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.8
2846 Female, age 79, unknown 34.6
2288 Male, age 75, left hemisphere 34.0
2481 Female, age 94, left hemisphere 33.3
1781 Male, age 74, unknown 32.1
2289 Male, age 61, right hemisphere 32.1
1854 Male, age 80, left hemisphere 30.6
2290 Female, age 72, unknown 30.4
1857 Female, age 85, left hemisphere 27.6
Claustrum
nTPM: 33.7
2292 Female, age 85, both hemispheres 39.3
1956 Male, age 74, unknown 35.2
2196 Female, age 79, unknown 34.7
2568 Male, age 61, both hemispheres 34.1
2645 Female, age 72, unknown 34.0
2198 Male, age 80, both hemispheres 33.5
2284 Female, age 91, both hemispheres 32.0
2491 Male, age 75, both hemispheres 31.1
2392 Female, age 94, both hemispheres 29.2
Globus pallidus, externus
nTPM: 36.4
2567 Female, age 72, unknown 41.0
2646 Male, age 61, right hemisphere 40.0
1996 Male, age 80, right hemisphere 35.8
2772 Female, age 79, unknown 33.3
2395 Male, age 75, both hemispheres 31.7
Globus pallidus, internus
nTPM: 35.7
2566 Female, age 72, unknown 39.7
2111 Female, age 85, right hemisphere 38.3
2287 Male, age 75, right hemisphere 36.1
1818 Male, age 74, unknown 35.1
2778 Female, age 91, both hemispheres 34.7
2483 Female, age 94, right hemisphere 33.1
2037 Male, age 80, right hemisphere 32.7
Nucleus accumbens
nTPM: 31.0
2391 Female, age 94, left hemisphere 33.3
2698 Female, age 72, unknown 33.1
2286 Male, age 75, left hemisphere 32.1
2732 Male, age 80, right hemisphere 30.7
2824 Male, age 61, right hemisphere 30.7
1783 Male, age 74, unknown 30.4
1806 Female, age 85, left hemisphere 29.5
1856 Female, age 91, right hemisphere 28.5
Nucleus basalis of Meynert
nTPM: 32.4
2569 Male, age 61, both hemispheres 37.7
2821 Male, age 75, both hemispheres 33.7
2484 Female, age 94, left hemisphere 29.2
2393 Male, age 80, right hemisphere 29.0
Nucleus of the diagonal band
nTPM: 29.6
2195 Female, age 85, both hemispheres 30.7
1979 Male, age 74, unknown 30.3
1812 Female, age 91, both hemispheres 29.8
2775 Male, age 80, right hemisphere 28.6
2029 Male, age 61, right hemisphere 28.3
Olfactory tubercle
nTPM: 29.8
2856 Male, age 75, right hemisphere 31.3
1846 Male, age 80, right hemisphere 30.5
1998 Female, age 91, both hemispheres 28.9
2487 Female, age 94, left hemisphere 28.4
Putamen
nTPM: 32.2
2489 Female, age 72, unknown 36.3
2647 Male, age 75, left hemisphere 34.7
2482 Female, age 94, left hemisphere 33.0
1829 Male, age 74, unknown 32.9
1838 Male, age 80, right hemisphere 29.4
1937 Female, age 91, right hemisphere 29.4
2466 Female, age 79, unknown 29.4
Septal nuclei
nTPM: 30.0
2629 Female, age 94, right hemisphere 33.0
2199 Male, age 80, right hemisphere 31.8
1960 Male, age 74, unknown 30.2
2059 Female, age 85, both hemispheres 30.1
2394 Male, age 61, left hemisphere 28.9
2009 Female, age 91, both hemispheres 28.7
2031 Female, age 72, unknown 27.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.0
Samples: 246

Max nTPM: 69.6
Min nTPM: 22.0
Std nTPM: 6.8
Median nTPM: 39.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 69.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 60.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 58.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 56.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 53.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 53.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 52.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 52.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 52.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 52.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.2
Samples: 246

Max nTPM: 58.5
Min nTPM: 21.2
Std nTPM: 6.5
Median nTPM: 36.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 58.5
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 57.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 56.4
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 54.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 54.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 53.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 53.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 51.3
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 51.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 51.1
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 51.1
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Brain - Putamen (basal ganglia)
Average nTPM: 45.7
Samples: 205

Max nTPM: 78.2
Min nTPM: 23.6
Std nTPM: 8.2
Median nTPM: 44.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 78.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 75.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 68.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 68.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 65.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 62.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 60.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 59.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 59.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 59.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.8
FF:10164-103B2 76 years, female 62.8
Globus pallidus
Scaled Tags Per Million: 82.5
FF:10175-103C4 60 years, female 94.7
FF:10161-103A8 76 years, female 70.2
Nucleus accumbens
Scaled Tags Per Million: 73.5
FF:10037-101F1 23-56 years, mixed 73.5
Putamen
Scaled Tags Per Million: 62.2
FF:10176-103C5 60 years, female 62.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Caudate
nTPM: 14.7
Samples: 4

Max nTPM: 16.8
Min nTPM: 13.7
Sample A Female 14.0
Sample B Female 14.4
Sample C Male 16.8
Sample D Male 13.7
Putamen
nTPM: 17.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 13.7
Sample A Female 20.2
Sample B Female 13.7
Sample C Male 16.6
Sample D Male 19.8
Septum
nTPM: 17.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 14.9
Sample A Female 16.2
Sample B Female 14.9
Sample C Male 18.2
Sample D Male 19.9
Ventral pallidum
nTPM: 16.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 15.3
Sample C Male 18.5
Sample D Male 19.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.2
Samples: 4

Max nTPM: 35.8
Min nTPM: 30.7
Sample A Male 35.8
Sample B Male 33.0
Sample C Female 33.3
Sample D Female 30.7
Septum
nTPM: 38.1
Samples: 4

Max nTPM: 39.2
Min nTPM: 37.1
Sample A Male 37.9
Sample B Male 37.1
Sample C Female 38.1
Sample D Female 39.2
Ventral forebrain
nTPM: 35.1
Samples: 4

Max nTPM: 37.5
Min nTPM: 31.5
Sample A Male 36.7
Sample B Male 37.5
Sample C Female 31.5
Sample D Female 34.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 26.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 26.6
248542 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 26.6
293469 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 24.3
Pallidum
Expression energy: 26.6
248542 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 26.6
293469 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 25.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.