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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.1 nTPM
HPA:62.1 nTPM
GTEx:123.3 nTPM
FANTOM5:29.3 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:24.0 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.4
2586 Male, age 75, left hemisphere 67.1
1827 Male, age 72, unknown 63.4
2666 Male, age 74, left hemisphere 60.9
1870 Female, age 42, unknown 59.6
2828 Female, age 72, unknown 59.3
2219 Male, age 76, both hemispheres 59.0
1833 Male, age 53, unknown 57.5
1830 Male, age 51, unknown 56.9
2019 Male, age 18, unknown 56.3
2411 Female, age 72, unknown 54.3
Dorsal raphe nucleus
nTPM: 56.2
2750 Male, age 76, both hemispheres 59.0
1828 Male, age 53, unknown 58.6
2047 Male, age 72, unknown 57.7
2298 Female, age 72, unknown 53.6
2016 Female, age 72, unknown 52.2
Inferior colliculus
nTPM: 58.0
2849 Male, age 72, unknown 62.5
1848 Female, age 42, unknown 58.5
1890 Male, age 53, unknown 56.7
2097 Female, age 72, unknown 54.4
Median raphe nucleus
nTPM: 59.7
2220 Male, age 76, midline 59.7
Pedunculopontine tegmental nucleus
nTPM: 59.8
2334 Male, age 80, both hemispheres 62.1
2338 Male, age 61, both hemispheres 61.0
1921 Female, age 85, both hemispheres 56.3
Periaquaductal grey, anterior
nTPM: 60.1
1947 Male, age 18, unknown 60.8
1795 Male, age 51, unknown 60.3
2502 Female, age 75, unknown 59.3
Periaquaductal grey, dorsal
nTPM: 54.2
2850 Male, age 76, both hemispheres 56.1
1831 Male, age 72, unknown 54.9
1840 Male, age 53, unknown 53.6
2464 Female, age 72, unknown 52.1
Periaquaductal grey, lateral
nTPM: 54.1
2272 Male, age 74, both hemispheres 56.0
2053 Male, age 18, unknown 53.9
2140 Male, age 76, both hemispheres 52.3
Pretectal area
nTPM: 60.5
2007 Male, age 72, unknown 65.9
1816 Male, age 51, unknown 65.3
1944 Female, age 72, unknown 64.1
1817 Female, age 42, unknown 64.0
1815 Male, age 53, unknown 62.6
2667 Female, age 75, unknown 61.8
2407 Male, age 75, both hemispheres 61.1
2825 Male, age 18, unknown 58.7
2224 Female, age 72, unknown 55.7
2273 Male, age 74, both hemispheres 53.6
2316 Male, age 76, right hemisphere 52.3
Red nucleus
nTPM: 62.1
2588 Male, age 74, left hemisphere 65.0
2725 Female, age 75, unknown 64.0
1821 Female, age 72, unknown 63.1
2503 Female, age 72, unknown 63.0
2227 Male, age 72, unknown 62.4
1954 Female, age 42, unknown 62.2
2785 Male, age 18, unknown 61.7
1865 Male, age 51, unknown 61.2
2584 Male, age 75, left hemisphere 61.2
2823 Male, age 76, right hemisphere 61.1
2769 Male, age 72, unknown 60.3
1904 Male, age 53, unknown 59.6
Substantia nigra
nTPM: 61.1
1916 Female, age 42, unknown 70.1
2699 Male, age 18, unknown 65.6
1941 Male, age 53, unknown 65.3
1889 Female, age 72, unknown 63.8
2665 Male, age 74, both hemispheres 63.3
1851 Male, age 51, unknown 62.3
2583 Male, age 75, right hemisphere 58.7
2409 Female, age 72, unknown 58.3
2590 Female, age 75, unknown 54.0
2241 Male, age 72, unknown 49.7
Superior colliculus
nTPM: 59.3
2668 Female, age 75, unknown 64.1
1796 Male, age 53, unknown 61.2
2587 Male, age 74, left hemisphere 61.0
2664 Male, age 75, both hemispheres 60.9
2261 Male, age 18, unknown 59.2
2087 Female, age 72, unknown 58.4
1895 Male, age 76, right hemisphere 58.3
1839 Male, age 51, unknown 57.6
1995 Male, age 72, unknown 57.0
1913 Female, age 42, unknown 55.7
Ventral tegmental area
nTPM: 58.7
1915 Female, age 42, unknown 63.8
2218 Male, age 76, both hemispheres 61.9
2223 Female, age 72, unknown 59.5
1942 Male, age 51, unknown 57.1
2410 Female, age 72, unknown 56.1
2021 Male, age 53, unknown 54.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 123.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.3
Samples: 139

Max nTPM: 214.7
Min nTPM: 48.1
Std nTPM: 27.1
Median nTPM: 118.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 214.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 213.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 204.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 193.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 184.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 173.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 172.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 162.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 162.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 160.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 158.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.3
FF:10158-103A5 76 years, female 29.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.3
Pig sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.8
Sample A Female 17.2
Sample B Female 15.5
Sample C Male 14.8
Sample D Male 13.8
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 15.7
Min nTPM: 10.8
Sample B Female 13.1
Sample C Male 15.7
Sample D Male 10.8
Substantia nigra
nTPM: 14.5
Samples: 4

Max nTPM: 19.5
Min nTPM: 10.3
Sample A Female 19.5
Sample B Female 11.5
Sample C Male 16.7
Sample D Male 10.3
Superior colliculi
nTPM: 15.2
Samples: 4

Max nTPM: 18.1
Min nTPM: 11.0
Sample A Female 18.1
Sample B Female 11.0
Sample C Male 16.4
Sample D Male 15.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 29.7
Min nTPM: 21.1
Sample A Male 29.7
Sample B Male 21.9
Sample C Female 21.1
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
69174040 Antisense, RP_050329_01_H12, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.