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GAS7
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:61.9 nTPM
HPA:61.9 nTPM
GTEx:61.1 nTPM
FANTOM5:126.6 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:97.9 nTPM
Allen mouse:18.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004838Antibody HPA064678
Glial cells MediumNot detected
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 61.9
Sample id Sample description nTPM
Hippocampus
nTPM: 9.2
1898 Male, age 80, left hemisphere 18.1
2621 Female, age 67, right hemisphere 16.3
1911 Female, age 85, right hemisphere 14.8
1855 Male, age 76, left hemisphere 6.0
2148 Female, age 91, left hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 11.7
2531 Female, age 67, both hemispheres 26.3
2530 Female, age 94, left hemisphere 18.6
2246 Female, age 85, both hemispheres 12.4
2010 Male, age 76, both hemispheres 7.3
1927 Female, age 91, both hemispheres 5.4
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 58.6
2613 Female, age 94, left hemisphere 88.7
1938 Female, age 85, left hemisphere 82.4
2764 Male, age 80, right hemisphere 76.8
1787 Male, age 76, left hemisphere 50.5
2686 Male, age 75, right hemisphere 36.4
2117 Female, age 91, right hemisphere 16.8
Hippocampus, CA1
nTPM: 17.5
2749 Male, age 80, left hemisphere 53.6
1873 Female, age 85, both hemispheres 18.1
2045 Male, age 76, both hemispheres 16.1
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 13.3
1892 Male, age 76, both hemispheres 20.7
1963 Male, age 80, left hemisphere 20.4
2437 Female, age 94, left hemisphere 20.4
1940 Female, age 85, left hemisphere 18.3
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 24.0
2620 Female, age 94, left hemisphere 47.2
2137 Male, age 80, left hemisphere 44.8
1867 Male, age 76, both hemispheres 20.2
1891 Female, age 85, both hemispheres 18.0
2861 Female, age 67, both hemispheres 13.8
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 37.7
1850 Male, age 80, both hemispheres 68.9
2532 Female, age 72, left hemisphere 66.8
1933 Female, age 85, both hemispheres 57.7
2693 Female, age 94, both hemispheres 49.5
2622 Female, age 67, right hemisphere 35.0
1990 Female, age 91, right hemisphere 30.6
2018 Male, age 76, both hemispheres 25.3
2692 Male, age 74, both hemispheres 19.8
2245 Female, age 91, both hemispheres 16.8
2250 Female, age 67, right hemisphere 6.4
Perirhinal gyrus
nTPM: 61.9
1841 Female, age 85, right hemisphere 85.7
1794 Male, age 80, right hemisphere 78.3
2848 Male, age 76, right hemisphere 68.7
1847 Female, age 91, left hemisphere 39.3
2521 Female, age 94, right hemisphere 37.6
Subiculum
nTPM: 22.5
1977 Female, age 85, both hemispheres 56.1
1901 Male, age 80, both hemispheres 34.2
2042 Male, age 76, both hemispheres 25.2
2438 Female, age 94, left hemisphere 15.4
2619 Male, age 74, both hemispheres 4.1
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 61.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 61.1
Samples: 197

Max nTPM: 122.4
Min nTPM: 14.6
Std nTPM: 17.9
Median nTPM: 58.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 122.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 113.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 112.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 110.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 108.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 104.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 102.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 100.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 100.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 98.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 98.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 126.6
FF:10153-102I9 76 years, female 142.4
FF:10169-103B7 60 years, female 110.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 83.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 65.4
Samples: 4

Max nTPM: 77.6
Min nTPM: 52.4
Sample A Female 77.6
Sample B Female 63.7
Sample C Male 68.0
Sample D Male 52.4
Entorhinal cortex
nTPM: 83.0
Samples: 4

Max nTPM: 91.6
Min nTPM: 78.3
Sample A Female 91.6
Sample B Female 78.7
Sample C Male 78.3
Sample D Male 83.5
Subiculum
nTPM: 63.9
Samples: 4

Max nTPM: 88.3
Min nTPM: 51.6
Sample A Female 88.3
Sample B Female 58.2
Sample C Male 57.5
Sample D Male 51.6
Ventral hippocampus
nTPM: 60.8
Samples: 4

Max nTPM: 90.0
Min nTPM: 40.7
Sample A Female 49.4
Sample B Female 40.7
Sample C Male 62.9
Sample D Male 90.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 97.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 97.9
Samples: 4

Max nTPM: 120.2
Min nTPM: 85.8
Sample A Male 93.3
Sample B Male 92.3
Sample C Female 85.8
Sample D Female 120.2
Hippocampal formation
nTPM: 82.9
Samples: 4

Max nTPM: 91.3
Min nTPM: 70.0
Sample A Male 81.0
Sample B Male 91.3
Sample C Female 89.1
Sample D Female 70.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.3
69672808 Antisense, RP_050428_04_E06, Mouse strain C57BL/6J (56 days, male) 19.1
73992909 Antisense, RP_051214_01_F03, Mouse strain C57BL/6J (56 days, male) 17.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.